Cytoscape help
We have developed an easy-to-use query and visualization system to represent our
interactome. The discussed protein clusters as well as the complete predicted
interactome can be observed through a web-start version of Cytoscape. A node and
edge attribute system is employed to represent the different types of
information. The color of the edge represents the degree of co-expression
calculated as the Pearson correlation coefficient, the line width of the edge
represents the GO biological process similarity score and the line style of the
edge represents the GO cellular component similarity score. The color of the
nodes corresponds to the CAST cluster the protein belongs to. TAIR functional
descriptions are shown as node labels. Subsets of the interactome that are of
interest to the researcher can be visualized easily by querying the interactome
for (a) protein(s) or for a functional description.