List of type I MADS-box genes in Arabidopsis thaliana and Oryza sativa Genes were annotated using GeneMark.hmm (Lukashin and Borodovsky, 1998) combined with manual correction based on sequence similarity with closely related genes. Hmmer (Eddy, 1996) was used to detect remote homologs. Links to MIPS annotations are added where the annotation is correct. If not, a link to protein and nucleic acid sequences is provided. For genes on BAC AF058914 there are different locus names in MIPS and TIGR. Gene family data is submitted to MAtDB and TAIR databases and will be available at time of publication of the paper.

	Class		Gene name		Accession number BAC		Locus name		Start BAC		Stop BAC		Length		Strand		Chrom		Number of exons
	M				AB011483		At5g60440		26829		28020		299		+		5		2
	O				AB009050		At5g55690		40372		41205		277		-		5		1
	N				AB015468		At5g48670		59946		60911		321		-		5		2
	O		AGL43		AB016885		At5g58890		33758		34642		294		+		5		1
	O		AGL30		AC004138 prot/mRNA		At2g03060		81852		83914		364		+		2		11
	N				AC004512_1		At1g65330		32543		33382		279		-		1		1
	M				AC004512_2		At1g65360		47399		48213		226		+		1		2
	N				AC004512_3		At1g65300		21003		21827		278		+		1		1
	O				AC004793		At1g31140		29171		30813		211		+		1		5
	N		AGL41		AC005168		At2g26880		51386		52188		260		-		2		1
	O				AC006551		At1g22590		24033		24524		163		+		1		1
	M				AC006585		At2g24840		25227		25859		210		+		2		1
	N				AC007184		At2g28700		3732		4502		256		-		2		1
	N				AC007627		At5g27960		64277		65368		363		+		5		1
	O				AC009243		At1g77950		50294		52807		203		+		1		6
	O				AC009243_2		At1g77980		58477		60332		244		-		1		6
	M				AC010155		At1g28460		35082		35630		182		+		1		1
	M				AC010155_2		At1g28450		37337		37894		185		+		1		1
	N				AC012393		At3g05860		56275		57224		260		-		3		3
	M				AC012463		At1g47760		71578		72286		184		+		1		2
	O				AC016529		At1g72350		73282		73956		224		-		1		1
	M				AC016829		At3g04100		84782		85405		207		+		3		1
	N				AC018721		At2g40210		40137		42106		402		-		2		3
	M				AC018908_2		At1g60920		24777		25352		191		-		1		1
	M				AC018908_1		At1g60880		6660		7265		201		+		1		1
	O				AC026479		At1g17310		2189		2827		212		-		1		1
	M				AC036106		At3g66656		29784		30320		178		-		3		1
	M		AGL28		Y12776		At1g01530		6766		7788		247		-		1		2
	N				AF058914		At5g26580 At5g26575		4471		5508		304		-		5		2
	N				AF058914_2		At5g26630 At5g26625		40425		47737		315		+		5		5
	N				AF058914_3		At5g26650 At5g26645		53688		54794		327		+		5		2
	O		AGL26		AF007270		At5g26950		84574		85554		292		-		5		2
	M		AGL29		AC004077		At2g34440		16781		17299		172		+		2		1
	O		AGL33		AC004484		At2g26320		66595		68743		209		-		2		8
	M		AGL39		AF007271		At5g27130		71901		75618		435		+		5		8
	M		AGL40		AL161589		At4g36590		121429		123079		243		-		4		7
	M				AL161539		At4g14530		46973		47658		213		-		4		2
	M				AL162875		At5g04640		89521		90489		322		+		5		1
	O				AC011809 prot/mRNA		At1g18750		60126		62604		440		+		1		10
	O				AC069252		At1g22130		2812402		2814274		335		-		1		10
	M				AC023673		At1g48150		497767		498738		323		+		1		1
	N				AC074360_2		At1g31630		59951		60970		339		-		1		1
	N				AC074360_1		At1g31640		55322		56806		464		-		1		2
	M				AB005231		At5g38620		463826		464875		349		-		5		1
	M				AB023034		At5g49420		34638		36134		402		-		5		1
	O				AC073178		At1g31630		88592		90480		339		-		1		10
	M				Os_AP003951_1				28733		29365		633		-		6
	M				Os_AP003951_2				50199		50771		572		-		6
	M				Os_AP003627				102168		102794		627		+		1
	M				Os_AP004093				72268		73128		861		+		2
	M				Os_Contig2417				5705		9967		210		+
	M				Os_Contig4095				1453		2109		218		+
	M				Os_Contig4276				6289		6921		210		+
	M				Os_Contig28459				1540		2078		141		-
	M				Os_Contig18609				465		1049		194		+
	N				Os_AP002070_1				57225		57947		240		+		1
	N				Os_AP002070_2				71207		72127		306		+		1
	N				Os_Contig28311				1167		1580		138		-
	N				Os_Contig603				3973		4776		267		+
	N				Os_Contig23118				1479		1904		141		+
	N				Os_Contig18573				850		1479		209		+
	N				Os_Contig119850				52		667		205		-
	N				Os_Contig31610				1805		2215		136		-
	N				Os_Contig18149				1420		2035		205		-
	O				Os_AP000616				39576		42209		855		+		6
	O				Os_AP003104				53129		54943		1815		+		1
	O				Os_AP003331_1				86944		88167		1224		+		1
	O				Os_AP003331_2				89653		90947		975		+		1
	O				Os_AP003380				8256		9365		1110		-		1
	O				Os_AP003436				171451		172890		1440		-		1
	O				Os_AP003763				127881		128597		279		+		6
	O				Os_AP003742				63104		64429		645		-		7
	O				Os_AP004322				4659		10836		477		+		6
	O				Os_AP003331_3				95818		98653		1188		+		1
	O				Os_Contig19550				853		1324		375		+
	O				Os_Contig52002				790		?		?		+
	O				Os_Contig20368				?		405		?		-
	O				Os_Contig11428				5081		?		?		+

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