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Packages that use startup | |
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classifier | |
main | |
startup | |
startup.cluster | |
startup.gui | |
util | |
util.featureSelection | |
util.io |
Classes in startup used by classifier | |
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ClassificationAction
This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site. |
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ClassificationAction.CLASSIFIERS
Choice of different available classifiers. |
Classes in startup used by main | |
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FunSiPWorkflow
This class represents the different actions etc. defined in a single configuration file. |
Classes in startup used by startup | |
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ClassificationAction
This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site. |
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ClassificationAction.CLASSIFIERS
Choice of different available classifiers. |
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ClassificationAction.COMMAND
The different dataflow/workflow commands. |
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ClassificationAction.FILE_TYPE
Possible filetypes which can be used when evaluating sequence files. |
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ClassificationAction.STRAND
Possible strands which should be evaluated by the classification models. |
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FunSiPWorkflow
This class represents the different actions etc. defined in a single configuration file. |
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FunSiPWorkflow.MULTITHREADING
The different types of available multithreading: a) NO_MULTITHREADING : no multithreading at all b) SINGLE_PC_MULTITHREADING : launches each different ClassificationAction in a seperate thread, and waits until they're all finished; c) CLUSTER_MULTITHREADING : attempts to launch each ClassificationAction in a seperate job for the cluster (standard qsub-command). |
Classes in startup used by startup.cluster | |
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ClassificationAction
This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site. |
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FunSiPWorkflow
This class represents the different actions etc. defined in a single configuration file. |
Classes in startup used by startup.gui | |
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ClassificationAction
This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site. |
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FunSiPWorkflow
This class represents the different actions etc. defined in a single configuration file. |
Classes in startup used by util | |
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ClassificationAction.CLASSIFIERS
Choice of different available classifiers. |
Classes in startup used by util.featureSelection | |
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ClassificationAction
This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site. |
Classes in startup used by util.io | |
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ClassificationAction
This class represents the dataflow that is necessary to either build a classification model for a certain functional site, or evaluate a sequence for said functional site. |
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