util.gene
Class DNAUtil

java.lang.Object
  extended by util.gene.DNAUtil

public class DNAUtil
extends java.lang.Object


Constructor Summary
DNAUtil()
           
 
Method Summary
 DualLocationList getPossibleLocations(java.lang.String sequence, java.lang.String pattern, boolean forward)
           
 java.util.List<java.lang.Integer> getPossibleLocations2(java.lang.String sequence, java.lang.String pattern, boolean forward)
           
 java.lang.String toOppositeStrand(java.lang.String sequence)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

DNAUtil

public DNAUtil()
Method Detail

getPossibleLocations

public DualLocationList getPossibleLocations(java.lang.String sequence,
                                             java.lang.String pattern,
                                             boolean forward)

getPossibleLocations2

public java.util.List<java.lang.Integer> getPossibleLocations2(java.lang.String sequence,
                                                               java.lang.String pattern,
                                                               boolean forward)

toOppositeStrand

public java.lang.String toOppositeStrand(java.lang.String sequence)