util.io
Class OutputClassification

java.lang.Object
  extended by util.io.OutputClassification

public class OutputClassification
extends java.lang.Object


Constructor Summary
OutputClassification(Options options, org.apache.log4j.Logger logger)
           
 
Method Summary
 void writeClassification(java.util.List<ClassificationResult> classificationResults)
          This method writes the classification (of the possible splicesites in a testfile) to an outputfile whose name is taken from the testfileheader.
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

OutputClassification

public OutputClassification(Options options,
                            org.apache.log4j.Logger logger)
Method Detail

writeClassification

public void writeClassification(java.util.List<ClassificationResult> classificationResults)
This method writes the classification (of the possible splicesites in a testfile) to an outputfile whose name is taken from the testfileheader. The confidence of the prediction is generated by going through all the classified distances and extracting the extremes, which are then presented as "100%". Possible splicesites are indicated by a '<--' arrow Likeley splicesites (with the likely-cutoff being defined as a user changeable variable) are indicated by a '<==' arrow