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A

A - Static variable in class util.FeatureExtractionExtension
 
AbstractAttributeEvaluation - Class in util.featureSelection
 
AbstractAttributeEvaluation(Logger, Instances, AttributeEvaluator) - Constructor for class util.featureSelection.AbstractAttributeEvaluation
 
ActionPanel - Class in var.experimenter
 
ActionPanel() - Constructor for class var.experimenter.ActionPanel
 
actionPerformed(ActionEvent) - Method in class main.FunSiPGui
 
actionPerformed(ActionEvent) - Method in class startup.gui.OptionsPanel
 
actionPerformed(ActionEvent) - Method in class startup.gui.SprClassificationActionPanel
 
actionPerformed(ActionEvent) - Method in class startup.gui.SprClassificationFeaturePanel
 
actionPerformed(ActionEvent) - Method in class startup.gui.SprOutputEditorWriter
 
actionPerformed(ActionEvent) - Method in class startup.gui.SprOutputPanel
 
actionPerformed(ActionEvent) - Method in class startup.gui.SprWorkflowPanel
 
actionPerformed(ActionEvent) - Method in class startup.gui.WizardFramework
 
actionPerformed(ActionEvent) - Method in class var.Experimenter
 
actionPerformed(ActionEvent) - Method in class var.experimenter.ActionsPanel
 
actionPerformed(ActionEvent) - Method in class var.experimenter.ChoosePanel
 
actionPerformed(ActionEvent) - Method in class var.experimenter.RangeOption
 
ActionsPanel - Class in var.experimenter
 
ActionsPanel(Dimension) - Constructor for class var.experimenter.ActionsPanel
 
addActionPanel(ActionPanel) - Method in class var.experimenter.RangePanel
 
addClassificationAction(ClassificationAction) - Method in class startup.FunSiPWorkflow
 
addClassificationFeature(ClassificationFeature) - Method in class startup.ClassificationAction
 
addConversion(Conversion) - Method in class startup.ClassificationAction
 
addDataList(String) - Method in class util.secondaryStructure.CreateSS
 
addInputMergeFiles(List<String>) - Method in class startup.FunSiPWorkflow
 
addOutputMergeFile(String) - Method in class startup.FunSiPWorkflow
 
addResult(CrossValidationResult, int, int, int, int) - Method in class util.io.CrossValidationOutput
 
AMINOACIDS - Static variable in class util.FeatureExtractionExtension
 
appendToFile(List<String>, String) - Method in class var.SimpleExperimenter
 
applyAttributeFilter(List<Integer>, int, File) - Method in interface classifier.Classifier
After having used featureselection to get a filter, this filter can be used to change the featurefiles in order to optimize the svms.
applyAttributeFilter(List<Integer>, int, File) - Method in class classifier.WekaSVM
After having used featureselection to get a filter, this filter can be used to change the featurefiles in order to optimize the svms.
applyFeatureSelectionToTest(List<Integer>, List<Double>) - Method in class util.featureSelection.FeatureSelectionStub
 
applyFeatureSelectionToTraining(Classifier, boolean) - Method in class util.featureSelection.FeatureSelectionStub
 
ArffFileSupport - Class in util.io
 
ArffFileSupport(Options, Logger) - Constructor for class util.io.ArffFileSupport
 
AttributeDescription - Class in util.classificationFeatures
 
AttributeDescription() - Constructor for class util.classificationFeatures.AttributeDescription
 
attributeNames() - Method in class classifier.wekaSVM.SMO
Returns the attribute names.

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