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R

randomSeedTipText() - Method in class classifier.wekaSVM.SMO
Returns the tip text for this property
RANGE - Static variable in class test.ExtractData
 
RangeOption - Class in var.experimenter
 
RangeOption(String, String) - Constructor for class var.experimenter.RangeOption
 
RangeOption.TYPE - Enum in var.experimenter
 
RangePanel - Class in var.experimenter
 
RangePanel(Dimension) - Constructor for class var.experimenter.RangePanel
 
readConfigurationFile(String) - Static method in class var.experimenter.ConfigurationFileReader
 
readData(String) - Method in class util.parsers.fasta.ExtractTrainingData
 
readFeatureFile(String, List<ValPosCombination>) - Method in class util.featureSelection.FeatureSelectionSupport
 
readFromFile(String) - Static method in class var.experimenter.ConfigurationFileReader
 
reading_frame - Variable in class util.classificationFeatures.AttributeDescription
 
remove() - Method in class startup.gui.SprSplashScreen
 
removeActionPanel(int) - Method in class var.experimenter.RangePanel
 
removeUpdate(DocumentEvent) - Method in class startup.gui.WizardFramework
 
retrieveStandardData(BufferedReader) - Method in class var.SimpleExperimenter
 
returnAllEvaluations() - Method in class util.featureSelection.AbstractAttributeEvaluation
 
returnSortedEvaluation() - Method in class util.featureSelection.AbstractAttributeEvaluation
Returns a list with combinations of values and their original positions within the list of evaluations.
returnUnsortedEvaluation() - Method in class util.featureSelection.AbstractAttributeEvaluation
 
reverse(ExtractTrainingData.AnnotationData) - Method in class util.parsers.fasta.ExtractTrainingData
 
reverseString(String) - Method in class util.classificationFeatures.implementations.BranchpointClassificationFeature
reverses the U2RNA string
reverseString(String) - Method in class util.classificationFeatures.implementations.test.IntronRetentionCompareClassificationFeature
 
RF2ClassificationFeature - Class in util.classificationFeatures.implementations.test
 
RF2ClassificationFeature() - Constructor for class util.classificationFeatures.implementations.test.RF2ClassificationFeature
 
RFClassificationFeature - Class in util.classificationFeatures.implementations
 
RFClassificationFeature() - Constructor for class util.classificationFeatures.implementations.RFClassificationFeature
 
RFClassificationFeatureDrawing - Class in util.classificationFeatures.implementations
 
RFClassificationFeatureDrawing(RFClassificationFeature) - Constructor for class util.classificationFeatures.implementations.RFClassificationFeatureDrawing
 
RocCurveData - Class in util
 
RocCurveData(String, int) - Constructor for class util.RocCurveData
 
rotateString(String) - Method in class util.classificationFeatures.implementations.test.NearestEqualClassificationFeature
 
run() - Method in class main.FunSiP
Method necessary to launch FunSiP as a different thread.
run() - Method in class startup.ClassificationAction
Starts the dataflow in a asymptotic thread way.
run() - Method in class startup.cluster.ClusterClassificationAction
Implementation of the run()-method of the Runnable interface.
run() - Method in class startup.features.FeatureRecognition
 
run() - Method in class startup.FunSiPWorkflow
Inherited because the workflow must be run as a thread.
run() - Method in class startup.gui.SprOutputEditorWriter
 
run() - Method in class startup.gui.SprSplashScreen
 
RUN_FROM_JAR - Static variable in class main.FunSiPJar
Accesible boolean indicating whether or not the program is running as a jar-file.

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