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I

IncorrectClassificationFeatureException - Exception in util.classificationFeatures
This exception represents the possible errors that can occur when constructing the classificationfeature.
IncorrectClassificationFeatureException() - Constructor for exception util.classificationFeatures.IncorrectClassificationFeatureException
 
IncorrectClassificationFeatureException(String) - Constructor for exception util.classificationFeatures.IncorrectClassificationFeatureException
 
inputFileSVMAcceptor - Variable in class util.Options
 
inputFileSVMDonor - Variable in class util.Options
 
insertUpdate(DocumentEvent) - Method in class startup.gui.WizardFramework
 
IntronRetention1ClassificationFeature - Class in util.classificationFeatures.implementations.test
 
IntronRetention1ClassificationFeature() - Constructor for class util.classificationFeatures.implementations.test.IntronRetention1ClassificationFeature
 
IntronRetention2ClassificationFeature - Class in util.classificationFeatures.implementations.test
 
IntronRetention2ClassificationFeature() - Constructor for class util.classificationFeatures.implementations.test.IntronRetention2ClassificationFeature
 
IntronRetentionCompareClassificationFeature - Class in util.classificationFeatures.implementations.test
 
IntronRetentionCompareClassificationFeature() - Constructor for class util.classificationFeatures.implementations.test.IntronRetentionCompareClassificationFeature
 
IOUtils - Class in util.io
This class takes care of various I/O related tasks.
IOUtils(Logger, ClassificationAction) - Constructor for class util.io.IOUtils
Constructor.
isComplexityCrossvalidation() - Method in class startup.ClassificationAction
 
isCorrectCDSLength() - Method in class util.parsers.embl.Embl_CDS_Data
 
isCorrectStartCodon() - Method in class util.parsers.embl.Embl_CDS_Data
 
isCorrectStopCodon() - Method in class util.parsers.embl.Embl_CDS_Data
 
isCorrectTest() - Method in class util.parsers.GeneTestResult
 
isDonor() - Method in class util.results.ClassificationResult
 
isExtended_structure() - Method in class util.secondaryStructure.SecondaryStructureData
 
isForwardStrand() - Method in class util.parsers.GeneData
 
isInteger(String) - Method in class startup.gui.SprClassificationActionPanel
 
isMergeResults() - Method in class startup.FunSiPWorkflow
 
isOptimizer() - Method in class startup.FunSiPWorkflow
 
isPattern_regexp() - Method in class startup.ClassificationAction
 
isRange() - Method in class var.experimenter.ChoosePanel
 
isReverse() - Method in class util.parsers.embl.Embl_CDS_Data
 

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