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Uses of Conversion in startup |
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Methods in startup that return types with arguments of type Conversion | |
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java.util.List<Conversion> |
ClassificationAction.getConversionList()
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Methods in startup with parameters of type Conversion | |
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void |
ClassificationAction.addConversion(Conversion c)
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Method parameters in startup with type arguments of type Conversion | |
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void |
ClassificationAction.setConversionList(java.util.List<Conversion> conversionList)
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Uses of Conversion in util.classificationFeatures |
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Methods in util.classificationFeatures that return Conversion | |
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Conversion |
ClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Method parameters in util.classificationFeatures with type arguments of type Conversion | |
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java.util.List<java.lang.Double> |
ClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
Uses of Conversion in util.classificationFeatures.implementations |
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Methods in util.classificationFeatures.implementations that return Conversion | |
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Conversion |
RFClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
PositionalGeneralClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
PositionalClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
CompositionalSecondaryStructureClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
CompositionalGeneralClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
CompositionalClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
BranchpointClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Method parameters in util.classificationFeatures.implementations with type arguments of type Conversion | |
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java.util.List<java.lang.Double> |
RFClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
PositionalGeneralClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
PositionalClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
CompositionalSecondaryStructureClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
CompositionalGeneralClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
CompositionalClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
BranchpointClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
Uses of Conversion in util.classificationFeatures.implementations.test |
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Methods in util.classificationFeatures.implementations.test that return Conversion | |
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Conversion |
WaveContentClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
VarianceClassificationFeature.getConversion()
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Conversion |
TetraHedronClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
TestNucleotideDistanceClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
SecStructSimpleClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
SecStructEvalClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
RF2ClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
PositionalSecondaryStructureClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
PhysicalPropertiesClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
PentaClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
NonBindingClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
NearSecondaryStructureClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
NearestEqualClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
IntronRetentionCompareClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
IntronRetention2ClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
IntronRetention1ClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
HydrophilicClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
GcContentClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Conversion |
DeterminantClassificationFeature.getConversion()
This method asks the classificationfeature for its conversion-type. |
Method parameters in util.classificationFeatures.implementations.test with type arguments of type Conversion | |
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java.util.List<java.lang.Double> |
WaveContentClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
VarianceClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
TetraHedronClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
TestNucleotideDistanceClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
SecStructSimpleClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
SecStructEvalClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
RF2ClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
PositionalSecondaryStructureClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
PhysicalPropertiesClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
PentaClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
NonBindingClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
NearSecondaryStructureClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
NearestEqualClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
IntronRetentionCompareClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
IntronRetention2ClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
IntronRetention1ClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
HydrophilicClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
GcContentClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
DeterminantClassificationFeature.extractFeatures(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
java.util.List<java.lang.Double> |
PhysicalPropertiesClassificationFeature.extractFeatures2(java.lang.String[] sequences,
int splicesite,
java.lang.String[] types,
java.util.List<Conversion> conversions,
java.lang.String[] conversion_sequences)
This method extracts the features from a sequence (relative to the splicesite) and returns those features in a list of double-values (standardized on double values because of its generic but still small-sized nature). |
Uses of Conversion in util.conversions |
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Methods in util.conversions that return Conversion | |
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static Conversion |
ConversionUtils.parseConversionFromString(java.lang.String[] split)
This method constructs the actual conversion and translation objects. |
static Conversion |
ConversionUtils.parseConversionFromString2(java.lang.String s)
This method constructs the actual conversion and translation objects. |
static Conversion |
ConversionUtils.parseConversionFromStringJar(java.lang.String[] split)
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static Conversion |
ConversionUtils.parseConversionFromStringNonJar(java.lang.String[] split)
This method constructs the actual conversion and translation objects. |
Uses of Conversion in util.conversions.implementations |
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Classes in util.conversions.implementations that implement Conversion | |
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class |
DNA_AA_Conversion
|
class |
DNA_MK_Conversion
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class |
DNA_RY_Conversion
|
class |
DNA_SW_Conversion
|
class |
FibonacciSwitchConversion
|
class |
Test_2_Conversion
|
class |
TEST_Conversion
|
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