Uses of Interface
util.classificationFeatures.ClassificationFeature

Packages that use ClassificationFeature
startup   
util   
util.classificationFeatures   
util.classificationFeatures.implementations   
util.classificationFeatures.implementations.test   
util.featureSelection   
var   
var.featureSelection   
 

Uses of ClassificationFeature in startup
 

Methods in startup that return types with arguments of type ClassificationFeature
 java.util.List<ClassificationFeature> ClassificationAction.getClassificationFeatures()
           
 

Methods in startup with parameters of type ClassificationFeature
 void ClassificationAction.addClassificationFeature(ClassificationFeature cfi)
           
 

Method parameters in startup with type arguments of type ClassificationFeature
 void ClassificationAction.setClassificationFeatures(java.util.List<ClassificationFeature> newList)
           
 

Uses of ClassificationFeature in util
 

Fields in util with type parameters of type ClassificationFeature
 java.util.List<ClassificationFeature> Options.cfList
           
 

Uses of ClassificationFeature in util.classificationFeatures
 

Subinterfaces of ClassificationFeature in util.classificationFeatures
 interface SeconderyStructureClassificationFeature
           
 

Methods in util.classificationFeatures that return ClassificationFeature
 ClassificationFeature ClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
static ClassificationFeature ClassificationFeatureUtils.parseFeatureFromString(java.lang.String s)
          This method creates a ClassificationFeature from a string, by using the java-reflection to locate the correct ClassificationFeature implementation.
static ClassificationFeature ClassificationFeatureUtils.parseFeatureFromString(java.lang.String[] split)
           
static ClassificationFeature ClassificationFeatureUtils.parseFeatureFromStringJar(java.lang.String[] split)
           
static ClassificationFeature ClassificationFeatureUtils.parseFeatureFromStringNonJar(java.lang.String[] split)
           
 

Method parameters in util.classificationFeatures with type arguments of type ClassificationFeature
static java.util.List<java.util.List<ValPosCombination>> ClassificationFeatureUtils.divide(java.util.List<ClassificationFeature> cfList, java.util.List<ValPosCombination> vpcList)
           
 

Uses of ClassificationFeature in util.classificationFeatures.implementations
 

Classes in util.classificationFeatures.implementations that implement ClassificationFeature
 class BranchpointClassificationFeature
           
 class CompositionalClassificationFeature
           
 class CompositionalGeneralClassificationFeature
           
 class CompositionalSecondaryStructureClassificationFeature
           
 class PositionalClassificationFeature
           
 class PositionalGeneralClassificationFeature
           
 class RFClassificationFeature
           
 

Methods in util.classificationFeatures.implementations that return ClassificationFeature
 ClassificationFeature RFClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature PositionalGeneralClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature PositionalClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature CompositionalSecondaryStructureClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature CompositionalGeneralClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature CompositionalClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature BranchpointClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 

Uses of ClassificationFeature in util.classificationFeatures.implementations.test
 

Classes in util.classificationFeatures.implementations.test that implement ClassificationFeature
 class DeterminantClassificationFeature
           
 class GcContentClassificationFeature
           
 class HydrophilicClassificationFeature
           
 class IntronRetention1ClassificationFeature
           
 class IntronRetention2ClassificationFeature
           
 class IntronRetentionCompareClassificationFeature
           
 class NearestEqualClassificationFeature
           
 class NearSecondaryStructureClassificationFeature
           
 class NonBindingClassificationFeature
           
 class PentaClassificationFeature
           
 class PhysicalPropertiesClassificationFeature
           
 class PositionalSecondaryStructureClassificationFeature
           
 class RF2ClassificationFeature
           
 class SecStructEvalClassificationFeature
           
 class SecStructSimpleClassificationFeature
           
 class TestNucleotideDistanceClassificationFeature
           
 class TetraHedronClassificationFeature
           
 class VarianceClassificationFeature
           
 class WaveContentClassificationFeature
           
 

Methods in util.classificationFeatures.implementations.test that return ClassificationFeature
 ClassificationFeature WaveContentClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature VarianceClassificationFeature.make_copy()
           
 ClassificationFeature TetraHedronClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature TestNucleotideDistanceClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature SecStructSimpleClassificationFeature.make_copy()
           
 ClassificationFeature SecStructEvalClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature RF2ClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature PositionalSecondaryStructureClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature PhysicalPropertiesClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature PentaClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature NonBindingClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature NearSecondaryStructureClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature NearestEqualClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature IntronRetentionCompareClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature IntronRetention2ClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature IntronRetention1ClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature HydrophilicClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature GcContentClassificationFeature.make_copy()
          Makes a copy of this particular classificationfeature.
 ClassificationFeature DeterminantClassificationFeature.make_copy()
           
 

Uses of ClassificationFeature in util.featureSelection
 

Method parameters in util.featureSelection with type arguments of type ClassificationFeature
 int[] FeatureSelectionSupport.findClassificationSites(java.util.List<ClassificationFeature> list)
           
 

Uses of ClassificationFeature in var
 

Method parameters in var with type arguments of type ClassificationFeature
 java.lang.String FSCompare.explanation(int loc, java.util.List<java.util.List<ValPosCombination>> attrib_list, java.util.List<ClassificationFeature> cfList)
          Generates an explanation for the located feature.
 

Uses of ClassificationFeature in var.featureSelection
 

Methods in var.featureSelection that return types with arguments of type ClassificationFeature
 java.util.List<ClassificationFeature> FeatureFileContent.getCfList()
           
 

Method parameters in var.featureSelection with type arguments of type ClassificationFeature
 void FeatureFileContent.setCfList(java.util.List<ClassificationFeature> cfList)