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java.lang.Objectmain.FunSiP
public class FunSiP
This class is a Java implementation of the splicemachine code, used for splice site prediction in the annotation pipeline. The original code was written in C, but we thought it might be a good opportunity to re-implement the code in Java, so it can be used with other classifiers implemented in (among others) the WEKA machine learning library. The original SpliceMachine was written by Dr. Sven Degroeve The new SPR (formerly known as JSpliceMachine) was written by Michiel Van Bel We do not really think that it is necessary to make certain methods private or protected, since this application is not really to be used as a library type. Incorrect use of methods can however lead to inconsistency, since there are dependencies on the local class data.
Field Summary | |
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static java.lang.String |
VERSION
Version of the program. |
Constructor Summary | |
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FunSiP(java.lang.String[] args)
The main launcher object for the project. |
Method Summary | |
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org.apache.log4j.Logger |
getLogger()
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static void |
main(java.lang.String[] args)
Main method for FunSiP. |
void |
run()
Method necessary to launch FunSiP as a different thread. |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final java.lang.String VERSION
Constructor Detail |
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public FunSiP(java.lang.String[] args)
args
- Array with commandline parameters.Method Detail |
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public static void main(java.lang.String[] args)
args
- Possible commandline parameters (at least one : the name/location
of the configuration file).public void run()
run
in interface java.lang.Runnable
public org.apache.log4j.Logger getLogger()
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