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java.lang.Objectutil.conversions.implementations.DNA_MK_Conversion
public class DNA_MK_Conversion
Field Summary | |
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static java.lang.String |
name
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Constructor Summary | |
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DNA_MK_Conversion()
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Method Summary | |
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char[] |
getDifferentCharacters()
This method returns all possible different characters that occur after the conversion of a sequence. |
java.lang.String |
getName()
Returns the name of conversion. |
int |
getNumberOfDifferentCharacters()
This method returns the number of different characters present in the final representation after a conversion on a sequence has occured (excluding the 'N' character). |
java.lang.String |
getParamName()
Returns the parameter name of the conversion. |
java.lang.String |
makeConversion(java.lang.String sequence)
This method performs the actual conversion from one string to another. |
boolean |
setOptions(java.lang.String[] options)
This method sets the possible options for this conversion. |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final java.lang.String name
Constructor Detail |
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public DNA_MK_Conversion()
Method Detail |
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public java.lang.String getName()
Conversion
getName
in interface Conversion
public java.lang.String makeConversion(java.lang.String sequence)
Conversion
makeConversion
in interface Conversion
sequence
- The original sequence
public boolean setOptions(java.lang.String[] options)
Conversion
setOptions
in interface Conversion
options
- The possible options (name+value)
public java.lang.String getParamName()
getParamName
in interface Conversion
public int getNumberOfDifferentCharacters()
Conversion
getNumberOfDifferentCharacters
in interface Conversion
public char[] getDifferentCharacters()
Conversion
getDifferentCharacters
in interface Conversion
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