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Hierarchy For All Packages
Package Hierarchies:
classifier
,
classifier.wekaSVM
,
main
,
startup
,
startup.cluster
,
startup.features
,
startup.gui
,
test
,
util
,
util.classificationFeatures
,
util.classificationFeatures.implementations
,
util.classificationFeatures.implementations.test
,
util.conversions
,
util.conversions.implementations
,
util.featureSelection
,
util.featureSelection.implementations
,
util.gene
,
util.io
,
util.parsers
,
util.parsers.embl
,
util.parsers.fasta
,
util.results
,
util.secondaryStructure
,
util.wekaUtilities
,
var
,
var.experimenter
,
var.featureSelection
Class Hierarchy
java.lang.Object
util.featureSelection.
AbstractAttributeEvaluation
util.io.
ArffFileSupport
weka.attributeSelection.ASEvaluation (implements java.io.Serializable)
weka.attributeSelection.AttributeEvaluator
util.featureSelection.implementations.
TestAttribEval
util.classificationFeatures.
AttributeDescription
util.classificationFeatures.implementations.
BranchpointClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.
BranchpointClassificationFeatureDrawing
(implements util.classificationFeatures.
ClassificationFeatureDrawing
)
startup.
ClassificationAction
(implements java.lang.Cloneable, java.lang.Runnable)
util.classificationFeatures.
ClassificationFeatureUtils
util.results.
ClassificationResult
weka.classifiers.Classifier (implements weka.core.CapabilitiesHandler, java.lang.Cloneable, weka.core.OptionHandler, java.io.Serializable)
classifier.wekaSVM.
SMO
(implements weka.core.TechnicalInformationHandler, weka.core.WeightedInstancesHandler)
startup.cluster.
ClusterClassificationAction
(implements java.lang.Runnable)
util.featureSelection.
CompareFS
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.JPanel (implements javax.accessibility.Accessible)
var.experimenter.
ActionPanel
var.experimenter.
ActionsPanel
(implements java.awt.event.ActionListener)
var.experimenter.
ChoosePanel
(implements java.awt.event.ActionListener)
var.
Experimenter
(implements java.awt.event.ActionListener)
startup.gui.
OptionsPanel
(implements java.awt.event.ActionListener)
var.experimenter.
OverridePanel
var.experimenter.
RangePanel
var.experimenter.
ScriptOptionAbstractClass
(implements var.experimenter.
ScriptOptionInterface
)
var.experimenter.
FixedOption
var.experimenter.
FixedRangeOption
var.experimenter.
VariableRangeExpOption
var.experimenter.
VariableRangeLinearOption
startup.gui.
SprClassificationActionPanel
(implements java.awt.event.ActionListener, java.awt.event.KeyListener)
startup.gui.
SprClassificationFeaturePanel
(implements java.awt.event.ActionListener)
startup.gui.
SprOutputEditorWriter
(implements java.awt.event.ActionListener, java.lang.Runnable)
startup.gui.
SprOutputPanel
(implements java.awt.event.ActionListener)
startup.gui.
SprWorkflowPanel
(implements java.awt.event.ActionListener)
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
startup.gui.
WizardFramework
(implements java.awt.event.ActionListener, javax.swing.event.DocumentListener, javax.swing.event.ListSelectionListener, java.awt.event.WindowFocusListener, java.awt.event.WindowListener)
javax.swing.JWindow (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
startup.gui.
SprSplashScreen
(implements java.lang.Runnable)
util.classificationFeatures.implementations.
CompositionalClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.
CompositionalClassificationFeatureDrawing
(implements util.classificationFeatures.
ClassificationFeatureDrawing
)
util.classificationFeatures.implementations.
CompositionalGeneralClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.
CompositionalSecondaryStructureClassificationFeature
(implements util.classificationFeatures.
SeconderyStructureClassificationFeature
)
util.classificationFeatures.implementations.
CompositionalSecondaryStructureClassificationFeatureDrawing
(implements util.classificationFeatures.
ClassificationFeatureDrawing
)
var.experimenter.
ConfigurationFileReader
util.wekaUtilities.
Conversions
util.conversions.
ConversionUtils
util.secondaryStructure.
CreateSS
util.io.
CrossValidationData
util.io.
CrossValidationOutput
util.results.
CrossValidationResult
util.classificationFeatures.implementations.test.
DeterminantClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.conversions.implementations.
DNA_AA_Conversion
(implements util.conversions.
Conversion
)
util.conversions.implementations.
DNA_MK_Conversion
(implements util.conversions.
Conversion
)
util.conversions.implementations.
DNA_RY_Conversion
(implements util.conversions.
Conversion
)
util.conversions.implementations.
DNA_SW_Conversion
(implements util.conversions.
Conversion
)
util.gene.
DNAUtil
util.
DualLocationList
util.parsers.embl.
Embl_CDS_Data
util.parsers.embl.
EmblFileData
util.parsers.embl.
EmblUtils
test.
ExtractData
util.results.
ExtractionResult
util.parsers.fasta.
ExtractTrainingData
util.parsers.
ExtractTrainingData
util.
FastaFileData
util.
FeatureExtractionExtension
var.featureSelection.
FeatureFileContent
startup.features.
FeatureRecognition
(implements java.lang.Runnable)
util.featureSelection.
FeatureSelectionStub
util.featureSelection.
FeatureSelectionSupport
util.conversions.implementations.
FibonacciSwitchConversion
(implements util.conversions.
Conversion
)
util.
FileInfo
util.io.
FileParser
util.io.
FileUtils
var.
FSCompare
var.
FSDraw
main.
FunSiP
(implements java.lang.Runnable)
main.
FunSiPFeatures
main.
FunSiPGui
(implements java.awt.event.ActionListener, java.awt.event.WindowListener)
main.
FunSiPJar
main.
FunSiPResultGui
startup.
FunSiPWorkflow
(implements java.lang.Runnable)
util.classificationFeatures.implementations.test.
GcContentClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.parsers.
GeneData
util.parsers.
GeneTestResult
util.parsers.
GeneTrainingData
util.classificationFeatures.implementations.test.
HydrophilicClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.test.
IntronRetention1ClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.test.
IntronRetention2ClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.test.
IntronRetentionCompareClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.io.
IOUtils
util.io.
ModelDataParser
util.io.
ModelDataParser.ModelData
util.io.
ModelInformationParser
util.classificationFeatures.implementations.test.
NearestEqualClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.test.
NearestEqualClassificationFeatureDrawing
(implements util.classificationFeatures.
ClassificationFeatureDrawing
)
util.classificationFeatures.implementations.test.
NearSecondaryStructureClassificationFeature
(implements util.classificationFeatures.
SeconderyStructureClassificationFeature
)
util.classificationFeatures.implementations.test.
NearSecondaryStructureClassificationFeatureDrawing
(implements util.classificationFeatures.
ClassificationFeatureDrawing
)
util.classificationFeatures.implementations.test.
NonBindingClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.io.
NtrFileSupport
util.
Options
util.io.
OutputClassification
startup.
ParameterFileParser
util.classificationFeatures.implementations.test.
PentaClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.test.
PhysicalPropertiesClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.
PositionalClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.
PositionalClassificationFeatureDrawing
(implements util.classificationFeatures.
ClassificationFeatureDrawing
)
util.classificationFeatures.implementations.
PositionalGeneralClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.test.
PositionalSecondaryStructureClassificationFeature
(implements util.classificationFeatures.
SeconderyStructureClassificationFeature
)
util.classificationFeatures.implementations.test.
PositionalSecondaryStructureClassificationFeatureDrawing
(implements util.classificationFeatures.
ClassificationFeatureDrawing
)
util.results.
PotentialResultsMap
util.parsers.fasta.
PrintData
var.experimenter.
RangeOption
(implements java.awt.event.ActionListener, java.io.Serializable)
util.classificationFeatures.implementations.test.
RF2ClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.
RFClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.
RFClassificationFeatureDrawing
(implements util.classificationFeatures.
ClassificationFeatureDrawing
)
util.
RocCurveData
var.experimenter.
ScriptGenerator
util.io.
SecondaryStructureData
util.secondaryStructure.
SecondaryStructureData
util.secondaryStructure.
SecondaryStructureExtraction
util.classificationFeatures.implementations.test.
SecStructEvalClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.test.
SecStructEvalClassificationFeatureDrawing
(implements util.classificationFeatures.
ClassificationFeatureDrawing
)
util.classificationFeatures.implementations.test.
SecStructSimpleClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.test.
SecStructSimpleClassificationFeatureDrawing
(implements util.classificationFeatures.
ClassificationFeatureDrawing
)
util.results.
SigmoidFunction
var.
SimpleExperimenter
classifier.wekaSVM.
SMO.BinarySMO
(implements java.io.Serializable)
util.
SMOSizeDataExtractor
util.
SortingAlgorithms
util.
SpliceFileInfo
util.
SpliceSite
classifier.
SVMOptions
(implements classifier.
ClassifierOptions
)
util.
SVMUtil
test.
Test
util.conversions.implementations.
Test_2_Conversion
(implements util.conversions.
Conversion
)
util.conversions.implementations.
TEST_Conversion
(implements util.conversions.
Conversion
)
util.classificationFeatures.implementations.test.
TestNucleotideDistanceClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.test.
TetraHedronClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
util.
FeatureException
util.classificationFeatures.
FeatureExtractionException
util.classificationFeatures.
IncorrectClassificationFeatureException
util.
Util
util.featureSelection.
ValPosCombination
util.classificationFeatures.implementations.test.
VarianceClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
util.classificationFeatures.implementations.test.
WaveContentClassificationFeature
(implements util.classificationFeatures.
ClassificationFeature
)
classifier.
WekaSVM
(implements classifier.
Classifier
)
Interface Hierarchy
util.classificationFeatures.
ClassificationFeatureDrawing
classifier.
Classifier
classifier.
ClassifierOptions
java.lang.Cloneable
util.classificationFeatures.
ClassificationFeature
util.classificationFeatures.
SeconderyStructureClassificationFeature
util.classificationFeatures.
SeconderyStructureClassificationFeature
util.conversions.
Conversion
var.experimenter.
ScriptOptionInterface
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
startup.gui.
WizardFramework.WIZARD_STATE
startup.gui.
SprOutputPanel.OUTPUT
startup.gui.
SprOutputPanel.OUTPUT_FILTER
startup.features.
FeatureRecognition.TARGET
classifier.
SVMOptions.KERNEL_TYPE
classifier.
Classifier.DATA_TYPE
var.experimenter.
RangeOption.TYPE
util.classificationFeatures.
ClassificationFeatureUtils.CLASSIFICATIONFEATURE_TYPES
util.parsers.
ExtractTrainingData.DATATYPES
util.featureSelection.
FeatureSelectionStub.FEATURE_SELECTION_TYPE
util.featureSelection.
FeatureSelectionStub.FEATURE_SELECTION_PURPOSE
startup.
FunSiPWorkflow.MULTITHREADING
startup.
ClassificationAction.COMMAND
startup.
ClassificationAction.FILE_TYPE
startup.
ClassificationAction.STRAND
startup.
ClassificationAction.CLASSIFIERS
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