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Uses of ClassificationFeature in startup |
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Methods in startup that return types with arguments of type ClassificationFeature | |
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java.util.List<ClassificationFeature> |
ClassificationAction.getClassificationFeatures()
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Methods in startup with parameters of type ClassificationFeature | |
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void |
ClassificationAction.addClassificationFeature(ClassificationFeature cfi)
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Method parameters in startup with type arguments of type ClassificationFeature | |
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void |
ClassificationAction.setClassificationFeatures(java.util.List<ClassificationFeature> newList)
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Uses of ClassificationFeature in util |
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Fields in util with type parameters of type ClassificationFeature | |
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java.util.List<ClassificationFeature> |
Options.cfList
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Uses of ClassificationFeature in util.classificationFeatures |
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Subinterfaces of ClassificationFeature in util.classificationFeatures | |
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interface |
SeconderyStructureClassificationFeature
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Methods in util.classificationFeatures that return ClassificationFeature | |
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ClassificationFeature |
ClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
static ClassificationFeature |
ClassificationFeatureUtils.parseFeatureFromString(java.lang.String s)
This method creates a ClassificationFeature from a string, by using the java-reflection to locate the correct ClassificationFeature implementation. |
static ClassificationFeature |
ClassificationFeatureUtils.parseFeatureFromString(java.lang.String[] split)
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static ClassificationFeature |
ClassificationFeatureUtils.parseFeatureFromStringJar(java.lang.String[] split)
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static ClassificationFeature |
ClassificationFeatureUtils.parseFeatureFromStringNonJar(java.lang.String[] split)
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Method parameters in util.classificationFeatures with type arguments of type ClassificationFeature | |
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static java.util.List<java.util.List<ValPosCombination>> |
ClassificationFeatureUtils.divide(java.util.List<ClassificationFeature> cfList,
java.util.List<ValPosCombination> vpcList)
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Uses of ClassificationFeature in util.classificationFeatures.implementations |
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Methods in util.classificationFeatures.implementations that return ClassificationFeature | |
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ClassificationFeature |
RFClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
PositionalGeneralClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
PositionalClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
CompositionalSecondaryStructureClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
CompositionalGeneralClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
CompositionalClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
BranchpointClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
Uses of ClassificationFeature in util.classificationFeatures.implementations.test |
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Methods in util.classificationFeatures.implementations.test that return ClassificationFeature | |
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ClassificationFeature |
WaveContentClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
VarianceClassificationFeature.make_copy()
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ClassificationFeature |
TetraHedronClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
TestNucleotideDistanceClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
SecStructSimpleClassificationFeature.make_copy()
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ClassificationFeature |
SecStructEvalClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
RF2ClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
PositionalSecondaryStructureClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
PhysicalPropertiesClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
PentaClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
NonBindingClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
NearSecondaryStructureClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
NearestEqualClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
IntronRetentionCompareClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
IntronRetention2ClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
IntronRetention1ClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
HydrophilicClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
GcContentClassificationFeature.make_copy()
Makes a copy of this particular classificationfeature. |
ClassificationFeature |
DeterminantClassificationFeature.make_copy()
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Uses of ClassificationFeature in util.featureSelection |
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Method parameters in util.featureSelection with type arguments of type ClassificationFeature | |
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int[] |
FeatureSelectionSupport.findClassificationSites(java.util.List<ClassificationFeature> list)
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Uses of ClassificationFeature in var |
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Method parameters in var with type arguments of type ClassificationFeature | |
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java.lang.String |
FSCompare.explanation(int loc,
java.util.List<java.util.List<ValPosCombination>> attrib_list,
java.util.List<ClassificationFeature> cfList)
Generates an explanation for the located feature. |
Uses of ClassificationFeature in var.featureSelection |
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Methods in var.featureSelection that return types with arguments of type ClassificationFeature | |
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java.util.List<ClassificationFeature> |
FeatureFileContent.getCfList()
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Method parameters in var.featureSelection with type arguments of type ClassificationFeature | |
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void |
FeatureFileContent.setCfList(java.util.List<ClassificationFeature> cfList)
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