util.parsers.fasta
Class PrintData
java.lang.Object
util.parsers.fasta.PrintData
public class PrintData
- extends java.lang.Object
Constructor Summary |
PrintData(java.lang.String directory)
|
Method Summary |
java.lang.String |
checkATG(java.lang.String sequence,
int start)
|
java.lang.String |
checkCAT(java.lang.String sequence,
int start)
|
int |
checkMul3(java.util.List<java.lang.Integer> list)
|
java.lang.String |
checkStop(java.lang.String sequence,
int last)
|
java.lang.String |
checkStopReverse(java.lang.String sequence,
int last)
|
boolean |
extractDataEnsembl(java.io.File file,
java.io.BufferedWriter writer)
|
boolean |
extractDataFasta(java.io.File file,
java.io.BufferedWriter writer)
|
static void |
main(java.lang.String[] args)
|
java.util.List<java.lang.Integer> |
parseHeaderFasta(java.lang.String s)
|
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
PrintData
public PrintData(java.lang.String directory)
main
public static void main(java.lang.String[] args)
extractDataEnsembl
public boolean extractDataEnsembl(java.io.File file,
java.io.BufferedWriter writer)
extractDataFasta
public boolean extractDataFasta(java.io.File file,
java.io.BufferedWriter writer)
checkMul3
public int checkMul3(java.util.List<java.lang.Integer> list)
checkStop
public java.lang.String checkStop(java.lang.String sequence,
int last)
checkATG
public java.lang.String checkATG(java.lang.String sequence,
int start)
checkStopReverse
public java.lang.String checkStopReverse(java.lang.String sequence,
int last)
checkCAT
public java.lang.String checkCAT(java.lang.String sequence,
int start)
parseHeaderFasta
public java.util.List<java.lang.Integer> parseHeaderFasta(java.lang.String s)