At3g33076.1 68410.m03915 retrotransposon gag protein family
Matching miRNAs:
| miRNA name | IGR name | mature miRNA sequence | Targets | Rfam | |
|---|---|---|---|---|---|
| 1 | prec14336 | igr4079#chr2#x1=18941708#l=2762_1395+1599 | TTGGATTGAAGGGAGCTCCT | 6 |
Gene Sequence:
AUGCAAGCUU CAUACCCACA ACAUCUGGAA GGACCGAAUA GAGGAGUCCG UUUUUCUUCU 60 .......... .......... .......... .......... .......... .......... prec14336 CCAGCUCCGG CGUUACCAGU CUACACCUCU CAUCCUCAAC ACUUGGAGGU ACAGAACAGA 120 .......... .......... .......... .......... .......... .......... prec14336 GAGACUCUGU UUUCCGGCAC AAAUCAACGG GACACACACC CUCGGCCCUU ACUCUUUGAC 180 .......... .......... .......... .......... .......... .......... prec14336 CAGUCGCGAU ACCAGGCGUC GACUUCAGAG AUACCUCGAC UUCCAGCUUC ACCCUUCGAA 240 .......... .......... .......... .......... .......... .......... prec14336 CCGCGUCGCU UUCACUCGUC ACCAUUAGAA CCACCAGGGU UUCAGCUGAA UGCCUCCACG 300 .......... .......... .......... .......... .......... .......... prec14336 GGUCUUCCAU CAUCUUCAGG UUUUCCAUCU AAUCCUUCCA CGGGGUUUCA GACUACUCCA 360 .......... .......... .......... .......... .......... .......... prec14336 ACCUUCCAAA CACAAACGUU UCCGCCUCAA UCUGCGCCAC AUCAACCUCG GUUUGAAGCA 420 .......... .......... .......... .......... .......... .......... prec14336 GCCCCGCGUA GGACUGUGGA UUAUCCGGCU UAUGAAGGAG GCAAUGCCGA CGAUUGGUUG 480 .......... .......... .......... .......... .......... .......... prec14336 UUCCGGCUAG AACAGUGCUU CUUAUCCAAU CGCACCCUAG AGGAAGAAAA ACUGGAAAAG 540 .......... .......... .......... .......... .......... .......... prec14336 GCUGUGUCUU GUUUAACAGG AGCAUCAGUU ACAUGGUGGC GCUGCUCUAA GGACAGAGAA 600 .......... .......... .......... .......... .......... .......... prec14336 CAAAUCUAUA CCUGGAGGGA AUUUCAAGAA AAGUUCAUGU UACGUUUUCG ACCAAGCAGA 660 .......... .......... .......... .......... .......... .......... prec14336 GGCAGUUCUG CUGUGGAUCA UCUCCUCAAC GUGAGACAAA CAGGAACCGU GGAGGAAUAC 720 .......... .......... .......... .......... .......... .......... prec14336 AGAGAACGUU UUGAAGAGCU CACAGUCGAC UUACCCCAUG UCACAUCUGA CAUAUUGGAA 780 .......... .......... .......... .......... .......... .......... prec14336 UCUGCAUUCC UCAAUGGACU GAGAAGAAGU CUUCGAGACC AGGUAGUUCG CUGUAGGCCA 840 .......... .......... .......... .......... .......... .......... prec14336 GUGAAUCUUG CAGAUAUUGU UGAGAUAGCU AAACUCAUUG AGUCACAAGA GCGGAAUGCU 900 .......... .......... .......... .......... .......... .......... prec14336 GUUAGUUACC AAGUGCGAAA UCAAGCUAGA ACCAACACAG CUCCAUUCAA CAAUCAGGUC 960 .......... .......... .......... .......... .......... .......... prec14336 UCCACAGGAU CUAGAGUGGU AGACCGUGCU CCAACGAGAC AACCCUUCAU UCCUAGUAGG 1020 .......... .......... .......... .......... .......... .......... prec14336 GAUACAACUC GUGCUUCAGG CAGUGGGGAA GCCAGGAACU CAAACCCGUG CCGCUACUGU 1080 .......... .......... .......... .......... .......... .......... prec14336 GGAGAUAGAU GGUUUCAAGG CCAUAAAUGC AAACCACAAA AGCUCAAGGG UCUAGCCAUA 1140 .......... .......... .......... .......... .......... .......... prec14336 ACAGAAGAGG UUGAAGAGGA GAGUCCUCUA AUUGAAGAGU UGAAUGAACC ACUGACAGAA 1200 .......... .......... .......... .......... .......... .......... prec14336 GAAGAAGGGG AUCCAGAACC UGCAGAAGGU UUCAAGGUAA UGACACUCAG CUCCUUGAAU 1260 .......... .......... .......... .......... .......... .......... prec14336 GAUGAGUCUC AAGAGCAGUC AAUGAAAAUG AGGGGAUACA UUGGCAACAC CAAAGUGGUG 1320 .......... .......... .......... .......... .......... .......... prec14336 UUAUUGGUUG AUUCAGGAGC AACUUGCAAC UUCAUUAGUG AGGCUUUGGU AAGAGAGAAA 1380 .......... .......... .......... .......... .......... .......... prec14336 GGAUGGUUAG UGACUCAAAC UCGCAGUUUU GGAGUUAAAG UUGGUGGAGG CAGAAUCAUC 1440 .......... .......... .......... .......... .......... .......... prec14336 AAAAGUAGUG GGAAGUGUGU CGAUAUACCA CUAGAGGUCC AAGGAAUUGA GUUUGUACAA 1500 .......... .......... .......... .......... .......... .......... prec14336 GACUACUACU UAUUUGACUU GGGAGAUUUG GAUUUGGUUC UGGGAUUUUC UUGGUUGGCA 1560 .......... .......... .......... .......... .......... .......... prec14336 GGACUAGGAG AAACAAGAGC CAACUGGAGA GAUUUGAGGA UCAGUUGGCA GAUAGGUCGC 1620 .......... .......... .......... .......... .......... .......... prec14336 ACAUGGGUAU CCUUAUACGG CGACCCGGAU CUAUGUAGAG GACAAAUUUC GAUGAGGUCU 1680 .......... .......... .......... .......... .......... .......... prec14336 AUGGAAAGAG UUAUCAAAUA CACUGGAACU GCAUAUCUCU UGGAACUAGC AUCUUUGUUU 1740 .......... .......... .......... .......... .......... .......... prec14336 GAAAGCAAGA AACAGGAAGA GCAAACAGCC UUGCAGCCUG CAAUCCAGAG GCUUUUGGAU 1800 .......... .......... .......... .......... .......... .......... prec14336 CAGUACCAAG GGGUUUUUCA AACUCCACAG CUAUUGCCAC CAGUUCGCAA CAGAGAACAC 1860 .......... .......... .......... .......... .......... .......... prec14336 GCCAUUACCU UACAAGAAGG GUCUUCACCA GUCAAUAUCC GACCAUACAG GUAUUCUUUU 1920 .......... .......... .......... .......... .......... .......... prec14336 GCUCAAAAGA AUGAGAUAGA GAAGCUUGUG CGUGAAAUGU UGAAUGCUCA GAUUAUAAGA 1980 .......... .......... .......... .......... .......... .......... prec14336 CCUAGCGUGA GUCCAUAUUC AAGUCCAGUU CUCCUAGUGA AAAAGAAAGA UGGAGGAUGG 2040 .......... .......... .......... .......... .......... .......... prec14336 CGCUUCUGCG UUGAUUAUCG AGCAUUGAAU GAAGCUACAA UACCCGAUAA GUAUCCGAUU 2100 .......... .......... .......... .......... .......... .......... prec14336 CCUGUUAUAG AAGAGCUAUU GGAUGAACUG AAAGGAGCCA CAGUGUUUUC AAAGUUGGAU 2160 .......... .......... .......... .......... .......... .......... prec14336 CUUAAAUCAG GCUAUUUCCA GAUAAGGAUG AAACUGAGUG AUGUGGAGAA GACUGCCUUC 2220 .......... .......... .......... .......... .......... .......... prec14336 AAGACACAUG AGGGCCAUUA UGAAUUUCUG GUAAUGCCAU UUGGCUUGAC CAACGCCCCC 2280 .......... .......... .......... .......... .......... .......... prec14336 UCCACCUUUC AAAGCGUCAU GAAUGACCUA UUCAGGCCAU ACUUGCGAAA GUUCGUCUUG 2340 .......... .......... .......... .......... .......... .......... prec14336 GUUUUCUUCG AUGAUAUACU AGUUUAUAGU CCUGAUAUGA AGACACAUUU GAAGCAUUUG 2400 .......... .......... .......... .......... .......... .......... prec14336 GAAACCGUCU UACAGCUACU GCAUCUUCAU CAGUUCUAUG CCAAUUUUAA AAAGUGCACA 2460 .......... .......... .......... .......... .......... .......... prec14336 UUUGGAAGCA CUAGGAUCUC AUAUUUGGGA CACAUUAUCU CUGAGCAAGG AGUCGCAACA 2520 .......... .......... .......... .......... .......... .......... prec14336 GAUCCAGAAA AGGUGGAAGC AAUGCUCCAG UGGCCUUUAC CUAAAUCUGU GACUGAGUUA 2580 .......... .......... .......... .......... .......... .......... prec14336 AGAGGCUUCC UAGGAUUCAC UGGCUACUAU CGCCGAUUUG UCAAGAAUUA CGGCCAAAUC 2640 .......... .......... .......... .......... .......... .......... prec14336 GCCAGACCAC UCAGAGAUCA GUUAAAAAAG AACAGUUUUG AUUGGAAUGA GGCAGCUACU 2700 .......... .......... .......... .......... .......... .......... prec14336 UCUGCAUUUC AGGCUCUCAA AGCAGCUGUU UCAGCACUAC CUGUGCUAGU GUUACCAGAU 2760 .......... .......... .......... .......... .......... .......... prec14336 UUCCAGCAGG AGUUUACUGU GGAAACGGAU GCAUCAGGGA UGGGGAUUGG AGCAGUACUG 2820 .......... .......... .......... .......... .......... .......... prec14336 UCACAGAAUA AGAGGCUUAU UGCAUUUCUC AGCCAAGCCU UCUCCAGUCA AGGCAGAAUA 2880 .......... .......... .......... .......... .......... .......... prec14336 AGGUCAGUUU AUGAACGUGA ACUGUUAGCC AUAGUGAAAG CUGUCACAAA GUGGAAGCAU 2940 .......... .......... .......... .......... .......... .......... prec14336 UACCUAUCAA GUAAAGAAUU CAUUAUCAAG ACAGAUCAAC GCAGCCUCAG ACAUUUGUUG 3000 .......... .......... .......... .......... .......... .......... prec14336 GAACAGAAGU CGGUGUCCAC AAUACAGCAG AGAUGGGCGU CUAAGUUGAG UGGACUGAAG 3060 .......... .......... .......... .......... .......... .......... prec14336 UAUAGGAUCG AAUAUAAACC AGGAGUUGAC AAUAAGGUAG CUGAUGCACU CUCAAGGAGA 3120 .......... .......... .......... .......... .......... .......... prec14336 CCUCCAACUG AGGCUCUCUC ACAGCUCACU AUAACUGGUC CUCCUACUAU CGACUUGACU 3180 .......... .......... .......... .......... .......... .......... prec14336 GCACUAAAGG CAGAAAUUCA GCAGGAUCAU GAGUUGAGCC AGAUACUUAA GAACUGGGCA 3240 .......... .......... .......... .......... .......... .......... prec14336 CAAGGGGACC ACCAUGAUUC UGACUUCACU GUGGCAGAUG GCUUGAUUUA CAGAAAAGGC 3300 .......... .......... .......... .......... .......... .......... prec14336 UGUUUGGUAA UUCCUGUAGG AUCUCCCUUC AUUCCAAAGA UGCUAGAGAA GUUCCACACC 3360 .......... .......*** ********** *******... .......... .......... prec14336 AGUCCUAUUG GAGGUCAUGA AGGUGCCCUU AAGACAUUCA AACGACUCAC AAGUGAAGUA 3420 .......... .......... .......... .......... .......... .......... prec14336 UACUGGAGAG GGUUGCGGAA AGACGUGGUU AACUACAUCA AGGGAUGCCA AAUCUGUCAA 3480 .......... .......... .......... .......... .......... .......... prec14336 GAGAAUAAAU ACUCUACCCU CUCUCCAGCC GGUUUACUAU CACCUCUCCC UAUUCCACAA 3540 .......... .......... .......... .......... .......... .......... prec14336 CAGAUUUGGA GUGAUGUCAG CUUGGACUUU GUAGAAGGGU UGCCAAGCUC UAACAGGUUU 3600 .......... .......... .......... .......... .......... .......... prec14336 AACUGUAUAU UGGUAGUGGU GGAUAGAUUA AGUAAGUAUA GUCAUUUCAU UCCACUUAAA 3660 .......... .......... .......... .......... .......... .......... prec14336 CAUCCAUUCA CUGCCAAGAC UGUAGUUGAG GCCUUCAUAA GAGAUGUAGU CAAGCUACAU 3720 .......... .......... .......... .......... .......... .......... prec14336 GGCUUCCCAA ACACACUGGU UUCGGACAGG GACAGGAUUU UCCUGAGCGG AUUCUGGUCU 3780 .......... .......... .......... .......... .......... .......... prec14336 GAGUUGUUUA AGCUGCAGGG CACGGGGCUA CAGAAGAGUA CAGCCUAUCA CCCACAAACU 3840 .......... .......... .......... .......... .......... .......... prec14336 GAUGGGCAGA CCGAGGUUGU UAACAGAUGU CUUGAGUCUU AUUUGCGAUG CUUUGCAGGG 3900 .......... .......... .......... .......... .......... .......... prec14336 AGGAGGCCUA CAUCGUGGUU UCAGUGGUUA CCUUGGGCAG AAUACUGGUA CAACACCUCG 3960 .......... .......... .......... .......... .......... .......... prec14336 UACCAUUCAG CCACCAAAAC CACUCCCUUU CAAGCAGUCU AUGGUAGAGA ACCACCAGUU 4020 .......... .......... .......... .......... .......... .......... prec14336 CUGCUCAGGU AUGGCGAUAU UCCAACCAAU AAUGCGAAUG UAGAGGAGUU ACUUAAGGAU 4080 .......... .......... .......... .......... .......... .......... prec14336 AAGGAUGGAA UGCUGGUUGA AUUAAGAGAG AACUUGGAGA UAGCUCAAGC UCAAAUGAAA 4140 .......... .......... .......... .......... .......... .......... prec14336 AAGGCUGCUG AUAAAAGUCG ACGUGAUGUA GCGUUUGAAA UUGAUGAAUG GGUUUACUUG 4200 .......... .......... .......... .......... .......... .......... prec14336 AAGCUGCGUC CUUAUAGGCA AAGUUCUGUG GCUCAUAGGA AGAAUGAAAA GCUGUCCCAG 4260 .......... .......... .......... .......... .......... .......... prec14336 CGCUACUUCG GUCCAUUUAA AGUGCUGCAC CGCAUAGGUC AGGUCGCUUA CAAGCUCCAA 4320 .......... .......... .......... .......... .......... .......... prec14336 CUACCCGAAC ACAGCACAAU UCACCCGGUG UUCCAUGUCU CUCAACUGAA AAGGGCUGUA 4380 .......... .......... .......... .......... .......... .......... prec14336 CCUCCGUCAU UCACCCCGCA GGAACUUCCC AAGAUACUAU CACCCACACU GGAAUGGAAC 4440 .......... .......... .......... .......... .......... .......... prec14336 ACAGGACCUG AGAAGCUGCU AGAUAUCCGA CAGAGCAACA CAAAUUCAGG ACCAGAGGUG 4500 .......... .......... .......... .......... .......... .......... prec14336 CUGGUACAGU GGUCUGGAUU AUCAACCUUG GAAUCAACUU GGGAGCCGCU CCUCACUUUG 4560 .......... .......... .......... .......... .......... .......... prec14336 GUGCAGCAGU ACCCGGACUU CGACCUUGAG GACAAGGUCA GUCUUCUGCG CGGGAGCAUU 4620 .......... .......... .......... .......... .......... .......... prec14336 GAUAGGUUAC AGGUGACGUU GGCUGGUGUG AGAAGAAGGG CGAAAUCAAA UGGAAGGAAA 4680 .......... .......... .......... .......... .......... .......... prec14336 GGCAGAGCUC GUGAGAAGUU CCUGAGGAAG CUUCUAUUUA AAAGUGGCUA A 4731 .......... .......... .......... .......... .......... . prec14336