family
Nr |
COG description |
functional class** |
gene name |
copy nr*** |
76 |
Ribosomal protein L6P/L9E |
J |
RplF |
1 |
80 |
Ribosome recycling factor |
J |
Frr |
1 |
206 |
Ribosomal protein L16/L10E |
J |
RplP |
1 |
221 |
Seryl-tRNA synthetase |
J |
SerS |
1.04 |
263 |
Ribosomal protein S2 |
J |
RpsB |
1 |
314 |
Ribosomal protein S12 |
J |
RpsL |
1.01 |
454* |
ATPases |
CNU |
|
2.01 |
624 |
DNA-directed RNA polymerase,
alpha subunit/40 kD subunit |
K |
RpoA |
1.01 |
706 |
Predicted GTPase |
R |
Obg |
1 |
816* |
Ribosomal protein S3 |
J |
RpsC |
1.02 |
1111 |
Translation elongation factors
(GTPases) |
J |
FusA |
1.43 |
1421 |
Ribosomal protein L27 |
J |
RpmA |
1 |
1460 |
Ribosomal protein L15 |
J |
RplO |
1 |
1817 |
Type IIA topoisomerase (DNA
gyrase/topo II, topoisomerase IV), A subunit |
L |
GyrA |
1.72 |
1836* |
membrane GTPase |
MT |
|
1.84 |
1839 |
Ribosomal protein L11 |
J |
RplK |
1.03 |
1910 |
Preprotein translocase subunit
SecY |
U |
SecY |
1.01 |
2107* |
Protein chain release factor A +
B |
J |
PrfA + PrfB |
1.76 |
2132 |
Peptidyl-tRNA hydrolase |
J |
Pth |
1.03 |
2185 |
Ribosomal protein L5 |
J |
RplE |
1.01 |
2297 |
Ribosomal protein L18 |
J |
RplR |
1 |
2318 |
Ribosomal protein S13 |
J |
RpsM |
1 |
2408 |
Threonyl-tRNA synthetase |
J |
ThrS |
1.05 |
2696 |
Molecular chaperone |
O |
DnaK |
1.45 |
2728 |
Predicted
S-adenosylmethionine-dependent methyltransferase |
M |
|
1 |
2734 |
Ribosomal protein S9 |
J |
RpsI |
1 |
2874 |
Ribosomal protein L1 |
J |
RplA |
1 |
3093 |
Ribosomal protein L3 |
J |
RplC |
1 |
3192 |
Ribosomal protein S4 and related
proteins |
J |
RpsD |
1.04 |
3215 |
Predicted GTPase, probable
translation factor |
J |
|
1 |
3222 |
Ribosomal protein L20 |
J |
RplT |
1 |
3235 |
Ribosomal protein S7 |
J |
RpsG |
1.01 |
3305 |
Ribosomal protein S8 |
J |
RpsH |
1 |
3363 |
Leucyl-tRNA synthetase |
J |
LeuS |
1 |
3373 |
Adenylate kinase and related
kinases |
F |
Adk |
1.02 |
4233 |
Type IIA topoisomerase (DNA
gyrase/topo II, topoisomerase IV), B subunit |
L |
GyrB |
1.78 |
5731 |
Tyrosyl-tRNA synthetase |
J |
TyrS |
1.08 |
8676 |
Preprotein translocase subunit
SecA (ATPase, RNA helicase) |
U |
SecA |
1.15 |
9296* |
DNA-directed RNA polymerase, beta
subunit/140 kD subunit + 160kD subunit |
K |
RpoB + RpoC |
1.97 |
11627 |
Translation elongation factor Ts |
J |
Tsf |
1 |
15111 |
Translation elongation factor P
(EF-P)/translation initiation factor 5A (eIF-5A) |
J |
Efp |
1.22 |
17179* |
Celenocysteine lyase-cysteine
sulfinate desulfinase |
E |
CsdB + NifS |
2.6 |
18279 |
Superfamily I DNA and RNA
helicases |
L |
UvrD |
1.53 |
31380 |
N-formylmethionyl-tRNA
deformylase |
J |
Def |
1.45 |
32033 |
Ribosomal protein L10 |
J |
RplJ |
1 |
32197 |
Predicted GTPases |
R |
|
1 |
32249 |
Translation initiation factor 2
(IF-2; GTPase) |
J |
InfB |
1 |
32638 |
Ribosomal protein L14 |
J |
RplN |
1 |
32928 |
GTPases - translation elongation
factors |
J |
TufB |
1.39 |
33119 |
Tryptophanyl-tRNA synthetase |
J |
TrpS |
1.09 |
35629* |
ABC-type transporters |
|
|
50.07 |
|
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|
* |
more than one COG in this family |
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** |
full descriptions of functional classes can be
found here http://www.ncbi.nlm.nih.gov/COG/ |
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*** |
copy nr = average number of genes per strain |
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