| All COGs for salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : X |
| Genes (#) | COG | COG description |
| 77 | | |
| Included Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : X |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE006468_713524 | AAL19602.1 | 10055 | | | putative permease |
| AE006468_190200 | AAL19125.1 | 10055 | | | 2-keto-3-deoxygluconate permease |
| AE006468_4853733 | AAL23411.1 | 10531 | | | putative inner membrane protein |
| AE006468_23335 | AAL18984.1 | 10531 | | | putative cytoplasmic protein |
| AE006468_3165141 | AAL21883.1 | 11170 | | | putative POT family peptide transport protein |
| AE006468_3135536 | AAL21861.1 | 11170 | | | putative lipoprotein |
| AE006468_1766967 | AAL20590.1 | 11170 | | | putative outer membrane lipoprotein |
| AE006468_1672219 | AAL20503.1 | 11170 | | | putative outer membrane lipoprotein |
| AE006468_93607 | AAL19044.1 | 11170 | | | putative outer membrane lipoprotein |
| AE006468_2529353 | AAL21311.1 | 12439 | | | putative negative regulator |
| AE006468_2529717 | AAL21312.1 | 12439 | | | putative negative regulator |
| AE006468_4262552 | AAL22891.1 | 13672 | | | putative outer membrane protein |
| AE006468_1220666 | AAL20062.1 | 13672 | | | putative outer membrane protein |
| AE006468_4829674 | AAL23389.1 | 15850 | | | putative outer membrane protein |
| AE006468_4830411 | AAL23390.1 | 15850 | | | putative outer membrane protein |
| AE006468_2535947 | AAL21317.1 | 15895 | | | putative outer membrane protein |
| AE006468_38773 | AAL18998.1 | 15895 | | | putative outer membrane or exported protein |
| AE006468_4249107 | AAL22878.1 | 16808 | | | putative inner membrane lipoprotein |
| AE006468_4250363 | AAL22879.1 | 16808 | | | putative cytoplasmic protein |
| AE006468_4576983 | AAL23154.1 | 16973 | | | putative outer membrane lipoprotein |
| AE006468_391990 | AAL19303.1 | 16973 | | | putative outer membrane lipoprotein |
| AE006468_3087148 | AAL21825.1 | 18180 | | | secreted protein in the Sop family; transferred to eukaryotic cells |
| AE006468_1054061 | AAL19906.1 | 18180 | | | homologous to secreted protein sopD |
| AE006468_718198 | AAL19606.1 | 18831 | | | putative cytoplasmic protein |
| AE006468_720347 | AAL19608.1 | 18831 | | | putative cytoplasmic protein |
| AE006468_4580195 | AAL23158.1 | 19389 | | | putative entericidin A precursor |
| AE006468_4580479 | AAL23159.1 | 19389 | | | putative entericidin B precursor |
| AE006468_385573 | AAL19295.1 | 20127 | | | putative inner membrane protein |
| AE006468_388783 | AAL19298.1 | 20127 | | | putative response regulator |
| AE006468_3528863 | AAL22230.1 | 22727 | | | putative outer membrane protein |
| AE006468_3529230 | AAL22231.1 | 22727 | | | putative periplasmic protein |
| AE006468_1297428 | AAL20143.1 | 22727 | | | putative outer membrane protein |
| AE006468_890462 | AAL19760.1 | 22727 | | | putative periplasmic protein |
| AE006468_415676 | AAL19320.1 | 22727 | | | putative periplasmic protein |
| AE006468_94771 | AAL19046.1 | 22727 | | | putative secreted protein |
| AE006468_2634402 | AAL21408.1 | 23580 | | | putative outer membrane protein |
| AE006468_2641875 | AAL21409.1 | 23580 | | | putative outer membrane protein |
| AE006468_3045697 | AAL21782.1 | 24803 | | | putative cytoplasmic protein |
| AE006468_2621943 | AAL21402.1 | 24803 | | | putative cytoplasmic protein |
| AE006468_2092957 | AAL20917.1 | 24803 | | | putative cytoplasmic protein |
| AE006468_4688701 | AAL23267.1 | 33065 | | | putative periplasmic protein |
| AE006468_3967814 | AAL22625.1 | 33065 | | | putative cytoplasmic protein |
| AE006468_4394675 | | 35674 | | | 16S ribosomal RNA |
| AE006468_4351130 | | 35674 | | | 16S ribosomal RNA |
| AE006468_4196059 | | 35674 | | | 16S ribosomal RNA |
| AE006468_4100132 | | 35674 | | | 16S ribosomal RNA |
| AE006468_3570463 | | 35674 | | | 16S ribosomal RNA |
| AE006468_2800118 | | 35674 | | | 16S ribosomal RNA |
| AE006468_289189 | | 35674 | | | 16S ribosomal RNA |
| AE006468_4396611 | | 35681 | | | 23S ribosomal RNA |
| AE006468_4353187 | | 35681 | | | 23S ribosomal RNA |
| AE006468_4198116 | | 35681 | | | 23S ribosomal RNA |
| AE006468_4102028 | | 35681 | | | 23S ribosomal RNA |
| AE006468_3567078 | | 35681 | | | 23S ribosomal RNA |
| AE006468_2796755 | | 35681 | | | 23S ribosomal RNA |
| AE006468_291244 | | 35681 | | | 23S ribosomal RNA |
| AE006468_4399797 | | 35685 | | | 5S ribosomal RNA |
| AE006468_4356373 | | 35685 | | | 5S ribosomal RNA |
| AE006468_4201302 | | 35685 | | | 5S ribosomal RNA |
| AE006468_4105111 | | 35685 | | | 5S ribosomal RNA |
| AE006468_3566622 | | 35685 | | | 5S ribosomal RNA |
| AE006468_3566867 | | 35685 | | | rRNA |
| AE006468_2796440 | | 35685 | | | 5S ribosomal RNA |
| AE006468_294519 | | 35685 | | | 5S ribosomal RNA |
| AE006468_3717600 | AAL22408.1 | 4081 | | | putative cytoplasmic protein |
| AE006468_1464057 | AAL20305.1 | 4081 | | | putative cytoplasmic protein |
| AE006468_1535535 | AAL20383.1 | 6192 | | | putative cytoplasmic protein |
| AE006468_528131 | AAL19427.1 | 6192 | | | hemolysin expression modulating protein (involved in environmental regulation of virulence factors) |
| AE006468_35339 | AAL18996.1 | 7853 | | | putative arylsulfatase |
| AE006468_44312 | AAL19002.1 | 7853 | | | putative arylsulfatase |
| AE006468_718902 | AAL19607.1 | 8829 | | | putative molecular chaperone, DnaJ family |
| AE006468_721039 | AAL19609.1 | 8829 | | | putative molecular chaperone, DnaJ family |
| AE006468_4306884 | AAL22938.1 | 9742 | | | putative arylsulfate sulfotransferase |
| AE006468_4186117 | AAL22824.1 | 9742 | | | putative outer membrane protein |
| AE006468_4186882 | AAL22825.1 | 9742 | | | putative cytoplasmic protein |
| AE006468_3354502 | AAL22065.1 | 9742 | | | putative arylsulfate sulfotransferase |
| AE006468_3355503 | AAL22066.1 | 9742 | | | putative arylsulfate sulfotransferase |
| Excluded Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : X |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE006468_2747033 | AAL21492.1 | 12104 | | | Gifsy-1 prophage protein |
| AE006468_1124410 | AAL19972.1 | 12104 | | | Gifsy-2 prophage; probable major tail protein |
| AE006468_987126 | AAL19852.1 | 12104 | | | Fels-1 prophage; putative major tail protein |
| AE006468_2746252 | AAL21490.1 | 12509 | | | Gifsy-1 prophage protein |
| AE006468_1125600 | AAL19974.1 | 12509 | | | Gifsy-2 prophage; probable minor tail protein |
| AE006468_988336 | AAL19853.1 | 12509 | | | Fels-1 prophage; putative minor tail protein |
| AE006468_2746587 | AAL21491.1 | 12987 | | | Gifsy-1 prophage protein |
| AE006468_1125205 | AAL19973.1 | 12987 | | | Gifsy-2 prophage; probable minor tail protein |
| AE006468_1119429 | AAL19966.1 | 13377 | | | Gifsy-2 prophage |
| AE006468_981876 | AAL19847.1 | 13377 | | | Fels-1 prophage |
| AE006468_2763711 | AAL21513.1 | 14403 | | | Gifsy-1 prophage protein |
| AE006468_1110765 | AAL19955.1 | 14403 | | | Gifsy-2 prophage |
| AE006468_4375350 | AAL22985.1 | 14990 | | | putative cytoplasmic protein |
| AE006468_2231496 | AAL21040.1 | 14990 | | | putative cytoplasmic protein |
| AE006468_2852997 | AAL21591.1 | 15580 | | | Fels-2 prophage protein |
| AE006468_2334013 | AAL21135.1 | 15580 | | | putative cytoplasmic protein |
| AE006468_1116367 | AAL19964.1 | 16671 | | | Gifsy-2 prophage |
| AE006468_979090 | AAL19845.1 | 16671 | | | Fels-1 prophage |
| AE006468_2765549 | AAL21515.1 | 18132 | | | Gifsy-1 prophage protein |
| AE006468_2331492 | AAL21133.1 | 18132 | | | ssrB-regulated factor |
| AE006468_1329466 | AAL20170.1 | 18132 | | | macrophage survival gene; reduced mouse virulence |
| AE006468_1248196 | AAL20092.1 | 18132 | | | DNA damage-inducible protein I |
| AE006468_1143523 | AAL19989.1 | 18132 | | | Gifsy-2 prophage; Homolog of msgA |
| AE006468_1109305 | AAL19953.1 | 18132 | | | Gifsy-2 prophage |
| AE006468_2760468 | AAL21509.1 | 19375 | | | Gifsy-1 prophage protein |
| AE006468_1175548 | AAL20019.1 | 19375 | | | Pathogenicity island encoded protein: SPI5 |
| AE006468_1113935 | AAL19960.1 | 19375 | | | Gifsy-2 prophage |
| AE006468_2733013 | AAL21480.1 | 20990 | | | Gifsy-1 prophage protein |
| AE006468_1963179 | AAL20781.1 | 20990 | | | PhoPQ-activated protein |
| AE006468_2759863 | AAL21508.1 | 24062 | | | Gifsy-1 prophage protein |
| AE006468_2337198 | AAL21139.1 | 24062 | | | putative inner membrane protein |
| AE006468_1114978 | AAL19961.1 | 24062 | | | Gifsy-2 prophage |
| AE006468_976812 | AAL19842.1 | 24062 | | | Fels-1 prophage |
| AE006468_2766750 | AAL21518.1 | 28245 | | | Gifsy-1 prophage protein |
| AE006468_1107990 | AAL19950.1 | 28245 | | | Gifsy-2 prophage |
| AE006468_2768928 | AAL21521.1 | 29215 | | | Gifsy-1 prophage protein |
| AE006468_1105785 | AAL19947.1 | 29215 | | | Gifsy-2 prophage; probable regulatory protein |
| AE006468_2766074 | AAL21516.1 | 30049 | | | Gifsy-1 prophage protein |
| AE006468_1108723 | AAL19952.1 | 30049 | | | Gifsy-2 prophage |
| AE006468_2767860 | AAL21520.1 | 30637 | | | Gifsy-1 prophage protein |
| AE006468_1106244 | AAL19948.1 | 30637 | | | Gifsy-2 prophage; probable regulatory protein |
| AE006468_2749476 | AAL21495.1 | 4623 | | | Gifsy-1 prophage: similar to minor tail protein Z |
| AE006468_1123434 | AAL19970.1 | 4623 | | | Gifsy-2 prophage; probable minor tail protein |
| AE006468_986133 | AAL19850.1 | 4623 | | | Fels-1 prophage; putative phage tail component |
| AE006468_4773762 | AAL23336.1 | 4754 | | | putative inner membrane protein |
| AE006468_3966637 | AAL22624.1 | 4754 | | | putative cytoplasmic protein |
| AE006468_3666938 | AAL22370.1 | 4754 | | | putative cytoplasmic protein |
| AE006468_537930 | AAL19433.1 | 4754 | | | putative transposase |
| AE006468_1116857 | AAL19965.1 | 4764 | | | Gifsy-2 prophage |
| AE006468_979568 | AAL19846.1 | 4764 | | | Fels-1 prophage |
| AE006468_2766442 | AAL21517.1 | 5012 | | | Gifsy-1 prophage protein |
| AE006468_1108334 | AAL19951.1 | 5012 | | | Gifsy-2 prophage |
| AE006468_2747787 | AAL21493.1 | 5496 | | | Gifsy-1 prophage protein |
| AE006468_1123997 | AAL19971.1 | 5496 | | | Gifsy-2 prophage; probable minor tail protein |
| AE006468_986714 | AAL19851.1 | 5496 | | | Fels-1 prophage |
| AE006468_2764531 | AAL21514.1 | 5510 | | | Gifsy-1 prophage protein |
| AE006468_1109954 | AAL19954.1 | 5510 | | | Gifsy-2 prophage |
| AE006468_1111509 | AAL19956.1 | 5602 | | | Gifsy-2 prophage; putative molecular chaperone, DnaJ family |
| AE006468_973404 | AAL19839.1 | 5602 | | | Fels-1 prophage; putative chaparone |
| AE006468_2758957 | AAL21506.1 | 6900 | | | Gifsy-1 prophage protein |
| AE006468_1115680 | AAL19963.1 | 6900 | | | Gifsy-2 prophage |
| AE006468_977770 | AAL19844.1 | 6900 | | | Fels-1 prophage |
| AE006468_2733337 | AAL21481.1 | 7461 | | | Gifsy-1 prophage protein |
| AE006468_1138914 | AAL19984.1 | 7461 | | | Gifsy-2 prophage; tail fiber assembly like-protein |
| AE006468_1001442 | AAL19863.1 | 7461 | | | Fels-1 prophage; putative tail assembly protein |
| AE006468_2734726 | AAL21483.1 | 8722 | | | Gifsy-1 prophage protein |
| AE006468_1136476 | AAL19983.1 | 8722 | | | Gifsy-2 prophage; probable tail fiber protein |
| AE006468_999070 | AAL19862.1 | 8722 | | | Fels-1 prophage; putative minor tail protein |
