All COGs for salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : U
Genes (#)COGCOG description
1COG0541Signal recognition particle GTPase
1COG0552Signal recognition particle GTPase
2COG0811Biopolymer transport proteins
2COG0848Biopolymer transport protein
3COG1157Flagellar biosynthesis/type III secretory pathway ATPase
1COG1298Flagellar biosynthesis pathway, component FlhA
1COG1338Flagellar biosynthesis pathway, component FliP
2COG1377Flagellar biosynthesis pathway, component FlhB
2COG1538Outer membrane protein
2COG1826Sec-independent protein secretion pathway components
1COG1987Flagellar biosynthesis pathway, component FliQ
2COG2095Multiple antibiotic transporter
2COG3114Heme exporter protein D
12COG3121P pilus assembly protein, chaperone PapD
10COG3188P pilus assembly protein, porin PapC
17COG3539P pilus assembly protein, pilin FimA
2COG3678P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein
2COG4669Type III secretory pathway, lipoprotein EscJ
2COG4789Type III secretory pathway, component EscV
2COG4790Type III secretory pathway, component EscR
1COG4792Type III secretory pathway, component EscU
2COG4794Type III secretory pathway, component EscS

Included Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : U
gene_idprotein_idgene_familycogcog_descriptionproduct
AE006468_2817202AAL21566.12743COG0541Signal recognition particle GTPase4.5S-RNP protein
AE006468_3738746AAL22431.12743COG0552Signal recognition particle GTPaseGTPase domain of cell division membrane protein
AE006468_3320009AAL22033.14367COG0811Biopolymer transport proteinsuptake of enterochelin
AE006468_813428AAL19689.14367COG0811Biopolymer transport proteinstol protein, membrane-spanning inner membrane protein
AE006468_3319577AAL22032.18394COG0848Biopolymer transport proteinuptake of enterochelin
AE006468_814124AAL19690.18394COG0848Biopolymer transport proteintol protein, role in outer membrane integrity
AE006468_1495691AAL20339.1454COG1157Flagellar biosynthesis/type III secretory pathway ATPasesecretion system apparatus protein
AE006468_2059909AAL20884.1454COG1157Flagellar biosynthesis/type III secretory pathway ATPaseflagellum-specific ATP synthase
AE006468_3036677AAL21774.1454COG1157Flagellar biosynthesis/type III secretory pathway ATPasesurface presentation of antigens
AE006468_2008212AAL20829.15506COG1298Flagellar biosynthesis pathway, component FlhAflagellar biosynthesis protein
AE006468_2065326AAL20891.132750COG1338Flagellar biosynthesis pathway, component FliPflagellar biosynthesis protein
AE006468_2010283AAL20830.111396COG1377Flagellar biosynthesis pathway, component FlhBputative part of export apparatus for flagellar proteins
AE006468_3031533AAL21767.111396COG1377Flagellar biosynthesis pathway, component FlhBsurface presentation of antigens
AE006468_2268829AAL21076.133634COG1538Outer membrane proteinputative outer membrane efflux protein
AE006468_392419AAL19304.133634COG1538Outer membrane proteinhomology to outer membrane efflux protein
AE006468_4180504AAL22817.120794COG1826Sec-independent protein secretion pathway componentscomponent of Sec-independent protein secretion pathway
AE006468_694573AAL19583.120794COG1826Sec-independent protein secretion pathway componentsputative Sec-independent protein secretion pathway component
AE006468_2066073AAL20892.132035COG1987Flagellar biosynthesis pathway, component FliQflagellar biosynthesis protein
AE006468_1598190AAL20440.19064COG2095Multiple antibiotic transporterputative MarC Transporter
AE006468_1842004AAL20666.19064COG2095Multiple antibiotic transporterputative MarC family integral membrane protein
AE006468_4016319AAL22675.133857COG3114Heme exporter protein Dheme exporter protein C
AE006468_2351391AAL21153.133857COG3114Heme exporter protein Dheme exporter protein C
AE006468_2246358AAL21054.125109COG3121P pilus assembly protein, chaperone PapDputative periplasmic chaperone protein
AE006468_3187727AAL21903.125109COG3121P pilus assembly protein, chaperone PapDputative fimbrial chaparone protein
AE006468_3826666AAL22499.125109COG3121P pilus assembly protein, chaperone PapDlong polar fimbrial chaperone
AE006468_605325AAL19499.125109COG3121P pilus assembly protein, chaperone PapDperiplasmic chaperone, required for type 1 fimbriae
AE006468_383580AAL19293.125109COG3121P pilus assembly protein, chaperone PapDputative fimbriae; chaparone
AE006468_378981AAL19290.125109COG3121P pilus assembly protein, chaperone PapDputative fimbriae; chaparone
AE006468_233978AAL19161.125109COG3121P pilus assembly protein, chaperone PapDputative periplasmic fimbrial chaperone
AE006468_25112AAL18986.125109COG3121P pilus assembly protein, chaperone PapDfimbrial chaparone
AE006468_30478AAL18991.125109COG3121P pilus assembly protein, chaperone PapDfimbrial chaparone
AE006468_207652AAL19140.125109COG3121P pilus assembly protein, chaperone PapDputative fimbrial chaparone
AE006468_4852095AAL23409.125109COG3121P pilus assembly protein, chaperone PapDputative fimbrial chaparone protein
AE006468_342829AAL19257.125109COG3121P pilus assembly protein, chaperone PapDputative fimbriae assembly chaparone
AE006468_606048AAL19500.116679COG3188P pilus assembly protein, porin PapCouter membrane usher protein
AE006468_381035AAL19292.116679COG3188P pilus assembly protein, porin PapCputative fimbriae; usher
AE006468_25803AAL18987.116679COG3188P pilus assembly protein, porin PapCfimbrial usher
AE006468_4849512AAL23408.116679COG3188P pilus assembly protein, porin PapCputative fimbrial usher protein
AE006468_2243855AAL21053.116679COG3188P pilus assembly protein, porin PapCputative outer membrane protein
AE006468_231303AAL19160.116679COG3188P pilus assembly protein, porin PapCputative fimbrial outer membrane usher
AE006468_205079AAL19139.116679COG3188P pilus assembly protein, porin PapCputativie fimbrial usher
AE006468_343566AAL19258.116679COG3188P pilus assembly protein, porin PapCputative fimbriae usher
AE006468_3188511AAL21904.116679COG3188P pilus assembly protein, porin PapCputative outer membrane usher protein
AE006468_3824115AAL22498.116679COG3188P pilus assembly protein, porin PapClong polar fimbrial outer membrane usher protein
AE006468_608675AAL19501.114734COG3539P pilus assembly protein, pilin FimAminor fimbrial subunit
AE006468_28425AAL18988.114734COG3539P pilus assembly protein, pilin FimAfimbrial subunit
AE006468_3827449AAL22500.125556COG3539P pilus assembly protein, pilin FimAlong polar fimbria
AE006468_3822485AAL22496.125556COG3539P pilus assembly protein, pilin FimAlong polar fimbrial minor protein
AE006468_604115AAL19497.125556COG3539P pilus assembly protein, pilin FimAmajor type 1 subunit fimbrin (pilin)
AE006468_384403AAL19294.125556COG3539P pilus assembly protein, pilin FimAputative fimbriae; major subunit
AE006468_235734AAL19164.125556COG3539P pilus assembly protein, pilin FimAputative minor fimbrial subunit
AE006468_29433AAL18989.125556COG3539P pilus assembly protein, pilin FimAfimbrial subunit
AE006468_24469AAL18985.125556COG3539P pilus assembly protein, pilin FimAfimbrial subunit
AE006468_208383AAL19141.125556COG3539P pilus assembly protein, pilin FimAputative fimbrial subunit
AE006468_230657AAL19159.125556COG3539P pilus assembly protein, pilin FimAputative fimbrial subunit
AE006468_4852849AAL23410.125556COG3539P pilus assembly protein, pilin FimAputative fimbrial chaparone protein
AE006468_3191120AAL21905.125556COG3539P pilus assembly protein, pilin FimAputative fimbrial-like protein
AE006468_609692AAL19502.125556COG3539P pilus assembly protein, pilin FimAputative fimbrial protein
AE006468_29994AAL18990.125556COG3539P pilus assembly protein, pilin FimAfimbrial subunit
AE006468_235258AAL19163.14603COG3539P pilus assembly protein, pilin FimAputative minor fimbrial subunit
AE006468_234749AAL19162.14603COG3539P pilus assembly protein, pilin FimAputaive minor fimbrial subunit
AE006468_1388557AAL20233.114238COG3678P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated proteinperiplasmic protein related to spheroblast formation
AE006468_4270595AAL22900.114238COG3678P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated proteinperiplasmic repressor of cpx regulon by interaction with CpxA
AE006468_3014996AAL21751.118957COG4669Type III secretory pathway, lipoprotein EscJcell invasion protein
AE006468_1490277AAL20333.118957COG4669Type III secretory pathway, lipoprotein EscJsecretion system apparatus protein
AE006468_3038400AAL21776.15506COG4789Type III secretory pathway, component EscVinvasion protein
AE006468_1493656AAL20338.15506COG4789Type III secretory pathway, component EscVsecretion system apparatus protein
AE006468_3033671AAL21770.132750COG4790Type III secretory pathway, component EscRsurface presentation of antigens
AE006468_1498744AAL20343.132750COG4790Type III secretory pathway, component EscRsecretion system apparatus protein
AE006468_1500431AAL20346.111396COG4792Type III secretory pathway, component EscUsecretion system apparatus protein
AE006468_3033385AAL21769.132035COG4794Type III secretory pathway, component EscSsurface presentation of antigens
AE006468_1499388AAL20344.132035COG4794Type III secretory pathway, component EscSsecretion system apparatus

Excluded Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : U
gene_idprotein_idgene_familycogcog_descriptionproduct
AE006468_983263AAL19848.118546COG0740Protease subunit of ATP-dependent Clp proteasesFels-1 prophage; protease subunits of ATP-dependent proteases, ClpP family
AE006468_1120666AAL19967.118546COG0740Protease subunit of ATP-dependent Clp proteasesGifsy-2 prophage; resembles Clp protease

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