| All COGs for escherichiacolio157h7_edl933 : T |
| Genes (#) | COG | COG description |
| 2 | COG0271 | Stress-induced morphogen (activity unknown) |
| 2 | COG0317 | Guanosine polyphosphate pyrophosphohydrolases/synthetases |
| 2 | COG0394 | Protein-tyrosine-phosphatase |
| 5 | COG0589 | Universal stress protein UspA and related nucleotide-binding proteins |
| 6 | COG0642 | Signal transduction histidine kinase |
| 15 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
| 1 | COG0784 | FOG: CheY-like receiver |
| 7 | COG0834 | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
| 4 | COG0840 | Methyl-accepting chemotaxis protein |
| 1 | COG1217 | Predicted membrane GTPase involved in stress response |
| 2 | COG1221 | Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
| 2 | COG1702 | Phosphate starvation-inducible protein PhoH, predicted ATPase |
| 6 | COG1762 | Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
| 2 | COG1966 | Carbon starvation protein, predicted membrane protein |
| 11 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
| 2 | COG2199 | FOG: GGDEF domain |
| 1 | COG2200 | FOG: EAL domain |
| 2 | COG2202 | FOG: PAS/PAC domain |
| 1 | COG2203 | FOG: GAF domain |
| 3 | COG2204 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
| 2 | COG2337 | Growth inhibitor |
| 2 | COG3275 | Putative regulator of cell autolysis |
| 2 | COG3279 | Response regulator of the LytR/AlgR family |
| 2 | COG3290 | Signal transduction histidine kinase regulating citrate/malate metabolism |
| 3 | COG3604 | Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
| Included Genes in escherichiacolio157h7_edl933 : T |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE005174_520494 | AAG54785.1 | 34690 | COG0271 | Stress-induced morphogen (activity unknown) | possible regulator of murein genes |
| AE005174_4146116 | AAG58324.1 | 34690 | COG0271 | Stress-induced morphogen (activity unknown) | orf, hypothetical protein |
| AE005174_4635243 | AAG58794.1 | 32745 | COG0317 | Guanosine polyphosphate pyrophosphohydrolases/synthetases | (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase |
| AE005174_3701112 | AAG57897.1 | 32745 | COG0317 | Guanosine polyphosphate pyrophosphohydrolases/synthetases | (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor |
| AE005174_1308178 | AAG55530.1 | 22782 | COG0394 | Protein-tyrosine-phosphatase | putative phosphatase |
| AE005174_2881242 | AAG57121.1 | 22782 | COG0394 | Protein-tyrosine-phosphatase | probable protein-tyrosine-phosphatase |
| AE005174_4982014 | AAG59116.1 | 6908 | COG0589 | Universal stress protein UspA and related nucleotide-binding proteins | putative regulator |
| AE005174_2115266 | AAG56385.1 | 6908 | COG0589 | Universal stress protein UspA and related nucleotide-binding proteins | |
| AE005174_2656114 | AAG56884.1 | 6908 | COG0589 | Universal stress protein UspA and related nucleotide-binding proteins | putative regulator |
| AE005174_4441646 | AAG58627.1 | 6908 | COG0589 | Universal stress protein UspA and related nucleotide-binding proteins | universal stress protein; broad regulatory function? |
| AE005174_722575 | AAG54942.1 | 6908 | COG0589 | Universal stress protein UspA and related nucleotide-binding proteins | orf, hypothetical protein |
| AE005174_443763 | AAG54713.1 | 14182 | COG0642 | Signal transduction histidine kinase | putative sensor kinase; hexosephosphate transport |
| AE005174_4704747 | AAG58867.1 | 14182 | COG0642 | Signal transduction histidine kinase | sensor histidine protein kinase phosphorylates UhpA |
| AE005174_675764 | AAG54903.1 | 18097 | COG0642 | Signal transduction histidine kinase | putative 2-component sensor protein |
| AE005174_2736545 | AAG56981.1 | 18097 | COG0642 | Signal transduction histidine kinase | putative 2-component sensor protein |
| AE005174_1813103 | AAG56082.1 | 18849 | COG0642 | Signal transduction histidine kinase | nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator |
| AE005174_3371687 | AAG57578.1 | 18849 | COG0642 | Signal transduction histidine kinase | sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL) |
| AE005174_799266 | AAG55015.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | regulator of kdp operon (transcriptional effector) |
| AE005174_1695474 | AAG55956.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | transcriptional regulatory protein |
| AE005174_5189538 | AAG59282.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | putative transcriptional regulator |
| AE005174_2909926 | AAG57142.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | transcriptional response regulatory protein (sensor BaeS) |
| AE005174_3976569 | AAG58159.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | quorum sensing Escherichia coli regulator B |
| AE005174_5526381 | AAG59581.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) |
| AE005174_479125 | AAG54745.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | positive response regulator for pho regulon, sensor is PhoR (or CreC) |
| AE005174_677202 | AAG54904.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | putative 2-component transcriptional regulator |
| AE005174_1320432 | AAG55542.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response transcriptional regulator for torA (sensor TorS) |
| AE005174_2357235 | AAG56595.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response transcriptional regulatory protein (RstB sensor) |
| AE005174_2737903 | AAG56982.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | putative 2-component transcriptional regulator |
| AE005174_4315279 | AAG58506.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis |
| AE005174_4973694 | AAG59106.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | transcriptional regulator in 2-component system |
| AE005174_5217714 | AAG59312.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | transcriptional regulatory protein, member of 2-component regulatory system, |
| AE005174_5522798 | AAG59578.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | catabolic regulation response regulator |
| AE005174_2644187 | AAG56872.1 | 27701 | COG0784 | FOG: CheY-like receiver | chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components |
| AE005174_1030100 | AAG55239.1 | 32448 | COG0834 | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | arginine 3rd transport system periplasmic binding protein |
| AE005174_2697065 | AAG56935.1 | 32448 | COG0834 | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | putative periplasmic binding transport protein |
| AE005174_3222130 | AAG57438.1 | 32448 | COG0834 | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | histidine-binding periplasmic protein of high-affinity histidine transport system |
| AE005174_1032513 | AAG55242.1 | 32448 | COG0834 | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | arginine 3rd transport system periplasmic binding protein |
| AE005174_767980 | AAG54989.1 | 32448 | COG0834 | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | putative periplasmic binding transport protein |
| AE005174_973220 | AAG55183.1 | 32448 | COG0834 | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | periplasmic glutamine-binding protein; permease |
| AE005174_3223133 | AAG57439.1 | 32448 | COG0834 | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | lysine-, arginine-, ornithine-binding periplasmic protein |
| AE005174_2648169 | AAG56876.1 | 32245 | COG0840 | Methyl-accepting chemotaxis protein | methyl-accepting chemotaxis protein II, aspartate sensor receptor |
| AE005174_2646522 | AAG56875.1 | 32245 | COG0840 | Methyl-accepting chemotaxis protein | methyl-accepting chemotaxis protein IV, peptide sensor receptor |
| AE005174_5479998 | AAG59538.1 | 32245 | COG0840 | Methyl-accepting chemotaxis protein | methyl-accepting chemotaxis protein I, serine sensor receptor |
| AE005174_2076858 | AAG56355.1 | 32245 | COG0840 | Methyl-accepting chemotaxis protein | methyl-accepting chemotaxis protein III, ribose sensor receptor |
| AE005174_4922968 | AAG59060.1 | 1836 | COG1217 | Predicted membrane GTPase involved in stress response | putative GTP-binding factor |
| AE005174_403558 | AAG54679.1 | 31616 | COG1221 | Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain | regulator for prp operon |
| AE005174_2211422 | AAG56501.1 | 31616 | COG1221 | Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain | psp operon transcriptional activator |
| AE005174_1411715 | AAG55638.1 | 1322 | COG1702 | Phosphate starvation-inducible protein PhoH, predicted ATPase | PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvation |
| AE005174_772280 | AAG54993.1 | 1322 | COG1702 | Phosphate starvation-inducible protein PhoH, predicted ATPase | putative ATP-binding protein in pho regulon |
| AE005174_4156145 | AAG58338.1 | 4753 | COG1762 | Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) | phosphotransferase system enzyme IIA, regulates N metabolism |
| AE005174_4421783 | AAG58610.1 | 4753 | COG1762 | Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) | putative phosphotransferase system enzyme subunit |
| AE005174_4959763 | AAG59093.1 | 4753 | COG1762 | Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) | PTS system, fructose-specific IIA component |
| AE005174_3886804 | AAG58064.1 | 4753 | COG1762 | Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) | PTS system, mannitol-specific enzyme II component, cryptic |
| AE005174_5305419 | AAG59391.1 | 4753 | COG1762 | Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) | putative PTS system enzyme II A component |
| AE005174_5015366 | AAG59148.1 | 6058 | COG1762 | Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) | PEP-protein phosphotransferase system enzyme I |
| AE005174_5476784 | AAG59536.1 | 10807 | COG1966 | Carbon starvation protein, predicted membrane protein | putative carbon starvation protein |
| AE005174_711146 | AAG54933.1 | 10807 | COG1966 | Carbon starvation protein, predicted membrane protein | carbon starvation protein |
| AE005174_656001 | AAG54892.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | fimbrial Z protein; probable signal transducer |
| AE005174_1812460 | AAG56081.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes |
| AE005174_734999 | AAG54955.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | sequence similarity to Shigella regulator |
| AE005174_3281849 | AAG57494.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | putative positive transcription regulator (sensor EvgS) |
| AE005174_3784400 | AAG57968.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | putative 2-component transcriptional regulator |
| AE005174_5233748 | AAG59323.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | putative 2-component transcriptional regulator |
| AE005174_445304 | AAG54714.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | putative response regulator; hexosephosphate transport |
| AE005174_3120431 | AAG57352.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) |
| AE005174_3095496 | AAG57328.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | nitrate/nitrite response regulator (sensor NarQ) |
| AE005174_2692183 | AAG56929.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | putative 2-component transcriptional regulator |
| AE005174_4706249 | AAG58868.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | response regulator, positive activator of uhpT transcription (sensor, uhpB) |
| AE005174_1419599 | AAG55643.1 | 4798 | COG2199 | FOG: GGDEF domain | orf, hypothetical protein |
| AE005174_2547332 | AAG56774.1 | 4798 | COG2199 | FOG: GGDEF domain | orf, hypothetical protein |
| AE005174_2002792 | AAG56280.1 | 23018 | COG2200 | FOG: EAL domain | |
| AE005174_2001482 | AAG56279.1 | 23018 | COG2202 | FOG: PAS/PAC domain | putative sensor kinase |
| AE005174_4024400 | AAG58205.1 | 32245 | COG2202 | FOG: PAS/PAC domain | aerotaxis sensor receptor, flavoprotein |
| AE005174_3809643 | AAG57998.1 | 31616 | COG2203 | FOG: GAF domain | putative transcriptional regulator |
| AE005174_3477671 | AAG57668.1 | 31616 | COG2204 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | putative 2-component transcriptional regulator |
| AE005174_4918542 | AAG59057.1 | 31616 | COG2204 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | response regulator for gln (sensor glnL) (nitrogen regulator I, NRI) |
| AE005174_5080868 | AAG59201.1 | 31616 | COG2204 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | response regulator of hydrogenase 3 activity (sensor HydH) |
| AE005174_3700451 | AAG57895.1 | 2091 | COG2337 | Growth inhibitor | probable growth inhibitor, PemK-like, autoregulated |
| AE005174_5334156 | AAG59423.1 | 2091 | COG2337 | Growth inhibitor | probable growth inhibitor, PemK-like, autoregulated |
| AE005174_3296763 | AAG57506.1 | 10507 | COG3275 | Putative regulator of cell autolysis | putative sensor protein |
| AE005174_2964180 | AAG57194.1 | 10507 | COG3275 | Putative regulator of cell autolysis | putative 2-component sensor protein |
| AE005174_3298475 | AAG57507.1 | 33796 | COG3279 | Response regulator of the LytR/AlgR family | putative 2-component transcriptional regulator |
| AE005174_2963464 | AAG57193.1 | 33796 | COG3279 | Response regulator of the LytR/AlgR family | orf, hypothetical protein |
| AE005174_733372 | AAG54954.1 | 23322 | COG3290 | Signal transduction histidine kinase regulating citrate/malate metabolism | putative sensor-type protein |
| AE005174_5234464 | AAG59324.1 | 23322 | COG3290 | Signal transduction histidine kinase regulating citrate/malate metabolism | putative 2-component sensor protein |
| AE005174_3645318 | AAG57839.1 | 11670 | COG3604 | Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains | formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons |
| AE005174_3397875 | AAG57601.1 | 11670 | COG3604 | Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains | putative 2-component regulator, interaction with sigma 54 |
| AE005174_3621994 | AAG57816.1 | 31616 | COG3604 | Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains | putative 2-component transcriptional regulator |
| Excluded Genes in escherichiacolio157h7_edl933 : T |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE005174_898894 | AAG55110.1 | 21142 | COG0639 | Diadenosine tetraphosphatase and related serine/threonine protein phosphatases | unknown protein encoded by prophage CP-933K |
| AE005174_3555703 | AAG57746.1 | 21142 | COG0639 | Diadenosine tetraphosphatase and related serine/threonine protein phosphatases | unknown protein encoded by prophage CP-933Y |
| AE005174_2599349 | AAG56828.1 | 21142 | COG0639 | Diadenosine tetraphosphatase and related serine/threonine protein phosphatases | protein phosphatase 1 modulates phosphoproteins, signals protein misfolding |
| AE005174_3650740 | AAG57843.1 | 21142 | COG0639 | Diadenosine tetraphosphatase and related serine/threonine protein phosphatases | protein phosphatase 2 |
| AE005174_2782565 | AAG57035.1 | 30788 | COG1974 | SOS-response transcriptional repressors (RecA-mediated autopeptidases) | putative repressor protein of prophage CP-933U |
| AE005174_301940 | AAG54571.1 | 30788 | COG1974 | SOS-response transcriptional repressors (RecA-mediated autopeptidases) | putative cI repressor protein for prophage CP-933H |
| AE005174_3004013 | AAG57241.1 | 30788 | COG1974 | SOS-response transcriptional repressors (RecA-mediated autopeptidases) | putative repressor protein CI of prophage CP-933V |
| AE005174_1882914 | AAG56160.1 | 30788 | COG1974 | SOS-response transcriptional repressors (RecA-mediated autopeptidases) | putative repressor protein encoded within prophage CP-933O |
| AE005174_543135 | AAG54806.1 | 4432 | COG2200 | FOG: EAL domain | orf, hypothetical protein |
| AE005174_383852 | AAG54658.1 | 4432 | COG2200 | FOG: EAL domain | orf, hypothetical protein |
| AE005174_1421055 | AAG55644.1 | 4432 | COG2200 | FOG: EAL domain | |
| AE005174_2575428 | AAG56804.1 | 4432 | COG2200 | FOG: EAL domain | orf, hypothetical protein |
| AE005174_3076923 | AAG57314.1 | 4432 | COG2200 | FOG: EAL domain | orf, hypothetical protein |
| AE005174_5158600 | AAG59259.1 | 4432 | COG2200 | FOG: EAL domain | orf, hypothetical protein |
| AE005174_1501242 | AAG55731.1 | 17633 | COG2310 | Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 | partial putative phage inhibition, colicin resistance and tellurite resistance protein |
| AE005174_1105635 | AAG55322.1 | 17633 | COG2310 | Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 | partial putative phage inhibition, colicin resistance and tellurite resistance protein |
| AE005174_1496851 | AAG55726.1 | 5421 | COG2310 | Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 | putative phage inhibition, colicin resistance and tellurite resistance protein |
| AE005174_1101244 | AAG55317.1 | 5421 | COG2310 | Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 | putative phage inhibition, colicin resistance and tellurite resistance protein |
| AE005174_1499598 | AAG55729.1 | 555 | COG2310 | Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 | putative phage inhibition, colicin resistance and tellurite resistance protein |
| AE005174_1496270 | AAG55725.1 | 555 | COG2310 | Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 | putative phage inhibition, colicin resistance and tellurite resistance protein |
| AE005174_1103991 | AAG55320.1 | 555 | COG2310 | Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 | putative phage inhibition, colicin resistance and tellurite resistance protein |
| AE005174_1100663 | AAG55316.1 | 555 | COG2310 | Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 | putative phage inhibition, colicin resistance and tellurite resistance protein |
| AE005174_1500245 | AAG55730.1 | 555 | COG2310 | Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 | putative phage inhibition, colicin resistance and tellurite resistance protein |
| AE005174_1104638 | AAG55321.1 | 555 | COG2310 | Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 | putative phage inhibition, colicin resistance and tellurite resistance protein |
