All COGs for salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : S
Genes (#)	COG	COG description
2	COG0217	Uncharacterized conserved protein
3	COG0316	Uncharacterized conserved protein
3	COG0586	Uncharacterized membrane-associated protein
2	COG1288	Predicted membrane protein
4	COG1376	Uncharacterized protein conserved in bacteria
2	COG1937	Uncharacterized protein conserved in bacteria
2	COG2261	Predicted membrane protein
2	COG2315	Uncharacterized protein conserved in bacteria
2	COG2353	Uncharacterized conserved protein
2	COG2606	Uncharacterized conserved protein
2	COG2840	Uncharacterized protein conserved in bacteria
2	COG2860	Predicted membrane protein
2	COG2879	Uncharacterized small protein
2	COG2949	Uncharacterized membrane protein
1	COG2966	Uncharacterized conserved protein
2	COG2990	Uncharacterized protein conserved in bacteria
2	COG2995	Uncharacterized paraquat-inducible protein A
2	COG3034	Uncharacterized protein conserved in bacteria
2	COG3152	Predicted membrane protein
4	COG3157	Hemolysin-coregulated protein (uncharacterized)
1	COG3610	Uncharacterized conserved protein
2	COG4453	Uncharacterized protein conserved in bacteria
3	COG4575	Uncharacterized conserved protein
2	COG4886	Leucine-rich repeat (LRR) protein

Included Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : S
gene_id	protein_id	gene_family	cog	cog_description	product
AE006468_1993786	AAL20815.1	3092	COG0217	Uncharacterized conserved protein	putative cytoplasmic protein
AE006468_4752665	AAL23317.1	3092	COG0217	Uncharacterized conserved protein	putative cytoplasmic protein
AE006468_240119	AAL19168.1	11588	COG0316	Uncharacterized conserved protein	putative HesB-like domain
AE006468_2680771	AAL21435.1	11588	COG0316	Uncharacterized conserved protein	putative regulator
AE006468_1452315	AAL20293.1	11588	COG0316	Uncharacterized conserved protein	putative HesB-like domain
AE006468_2479754	AAL21268.1	33056	COG0586	Uncharacterized membrane-associated protein	putative DedA family
AE006468_3322322	AAL22036.1	33056	COG0586	Uncharacterized membrane-associated protein	putative DedA family membrane protein
AE006468_3395194	AAL22099.1	33056	COG0586	Uncharacterized membrane-associated protein	putative DedA family membrane protein
AE006468_4705807	AAL23283.1	10476	COG1288	Predicted membrane protein	putative arginine repressor
AE006468_2451580	AAL21240.1	10476	COG1288	Predicted membrane protein	putative integral membrane protein
AE006468_2096296	AAL20919.1	12967	COG1376	Uncharacterized protein conserved in bacteria	putative periplasmic protein
AE006468_903897	AAL19773.1	12967	COG1376	Uncharacterized protein conserved in bacteria	putative periplasmic protein
AE006468_1297782	AAL20144.1	12967	COG1376	Uncharacterized protein conserved in bacteria	putative periplasmic protein
AE006468_1457989	AAL20299.1	12967	COG1376	Uncharacterized protein conserved in bacteria	putative LysM domain
AE006468_3183783	AAL21899.1	9352	COG1937	Uncharacterized protein conserved in bacteria	putative cytoplasmic protein
AE006468_1718823	AAL20546.1	9352	COG1937	Uncharacterized protein conserved in bacteria	putative cytoplasmic protein
AE006468_1896845	AAL20712.1	16139	COG2261	Predicted membrane protein	putative transglycosylase-associated protein
AE006468_1353139	AAL20199.1	16139	COG2261	Predicted membrane protein	putative inner membrane protein
AE006468_4471944	AAL23075.1	25405	COG2315	Uncharacterized protein conserved in bacteria	putative cytoplasmic protein
AE006468_637778	AAL19530.1	25405	COG2315	Uncharacterized protein conserved in bacteria	putative cytoplasmic protein
AE006468_1709056	AAL20539.1	21340	COG2353	Uncharacterized conserved protein	putative periplasmic protein
AE006468_1244860	AAL20087.1	21340	COG2353	Uncharacterized conserved protein	putative secreted protein
AE006468_555403	AAL19449.1	13904	COG2606	Uncharacterized conserved protein	putative cytoplasmic protein
AE006468_4807528	AAL23367.1	13904	COG2606	Uncharacterized conserved protein	putative cytoplasmic protein
AE006468_1752842	AAL20576.1	11162	COG2840	Uncharacterized protein conserved in bacteria	putative Smr domain
AE006468_2496760	AAL21287.1	11162	COG2840	Uncharacterized protein conserved in bacteria	putative Smr domain containing protein
AE006468_3930542	AAL22597.1	10183	COG2860	Predicted membrane protein	putative inner membrane protein
AE006468_240609	AAL19169.1	10183	COG2860	Predicted membrane protein	putative inner membrane protein
AE006468_4787267	AAL23349.1	139	COG2879	Uncharacterized small protein	putative cytoplasmic protein
AE006468_663443	AAL19552.1	139	COG2879	Uncharacterized small protein	putative cytoplasmic protein
AE006468_2280227	AAL21088.1	6402	COG2949	Uncharacterized membrane protein	vancomycin sensitivity protein
AE006468_3390225	AAL22095.1	6402	COG2949	Uncharacterized membrane protein	putative integral membrane protein
AE006468_4804628	AAL23364.1	8431	COG2966	Uncharacterized conserved protein	putative membrane protein
AE006468_1017515	AAL19876.1	10710	COG2990	Uncharacterized protein conserved in bacteria	homolog of virK
AE006468_2928373	AAL21666.1	10710	COG2990	Uncharacterized protein conserved in bacteria	similar to virK in Shigella
AE006468_1944612	AAL20763.1	12040	COG2995	Uncharacterized paraquat-inducible protein A	putative inner membrane protein
AE006468_1153927	AAL19996.1	12040	COG2995	Uncharacterized paraquat-inducible protein A	paraquat-inducible protein A
AE006468_3443318	AAL22149.1	17444	COG3034	Uncharacterized protein conserved in bacteria	putative inner membrane protein
AE006468_356810	AAL19269.1	17444	COG3034	Uncharacterized protein conserved in bacteria	putative periplasmic protein
AE006468_4291842	AAL22923.1	24871	COG3152	Predicted membrane protein	putative inner membrane protein
AE006468_3399608	AAL22107.1	24871	COG3152	Predicted membrane protein	putative inner membrane protein
AE006468_3290972	AAL22005.1	24435	COG3157	Hemolysin-coregulated protein (uncharacterized)	putative cytoplasmic protein
AE006468_4763557	AAL23327.1	24435	COG3157	Hemolysin-coregulated protein (uncharacterized)	putative cytoplasmic protein
AE006468_318679	AAL19236.1	24435	COG3157	Hemolysin-coregulated protein (uncharacterized)	putative cytoplasmic protein
AE006468_316893	AAL19233.1	24435	COG3157	Hemolysin-coregulated protein (uncharacterized)	putative cytoplasmic protein
AE006468_4804164	AAL23363.1	8431	COG3610	Uncharacterized conserved protein	putative inner membrane protein
AE006468_3838209	AAL22512.1	15607	COG4453	Uncharacterized protein conserved in bacteria	putative cytoplasmic protein
AE006468_4562560	AAL23141.1	15607	COG4453	Uncharacterized protein conserved in bacteria	putative copG family helix-turn-helix protein
AE006468_2418778	AAL21212.1	23951	COG4575	Uncharacterized conserved protein	putative inner membrane protein
AE006468_2949309	AAL21687.1	23951	COG4575	Uncharacterized conserved protein	putative inner membrane protein
AE006468_3396798	AAL22102.1	23951	COG4575	Uncharacterized conserved protein	putative inner membrane protein
AE006468_2340885	AAL21143.1	33219	COG4886	Leucine-rich repeat (LRR) protein	Leucine-rich repeat protein
AE006468_866944	AAL19737.1	33219	COG4886	Leucine-rich repeat (LRR) protein	leucine-rich repeat protein

Excluded Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : S
gene_id	protein_id	gene_family	cog	cog_description	product
AE006468_617360	AAL19511.1	5338	COG2246	Predicted membrane protein	putative glycosyl translocase
AE006468_4426919	AAL23030.1	5338	COG2246	Predicted membrane protein	putative phage glucose translocase
AE006468_1593330	AAL20434.1	29084	COG3111	Uncharacterized conserved protein	putative periplasmic protein
AE006468_3340254	AAL22050.1	29084	COG3111	Uncharacterized conserved protein	putative outer membrane protein
AE006468_992892	AAL19857.1	5708	COG4672	Phage-related protein	Fels-1 prophage; putative minor tail protein
AE006468_1130676	AAL19979.1	5708	COG4672	Phage-related protein	Gifsy-2 prophage; probable minor tail protein
AE006468_2742145	AAL21487.1	5708	COG4672	Phage-related protein	Gifsy-1 prophage protein
AE006468_991786	AAL19855.1	9713	COG4718	Phage-related protein	Fels-1 prophage; putative minor tail protein
AE006468_1128993	AAL19976.1	9713	COG4718	Phage-related protein	Gifsy-2 prophage; probable minor tail protein
AE006468_2742853	AAL21488.1	9713	COG4718	Phage-related protein	Gifsy-1 prophage protein
AE006468_2740856	AAL21485.1	8896	COG4723	Phage-related protein, tail component	Gifsy-1 prophage protein
AE006468_994231	AAL19859.1	8896	COG4723	Phage-related protein, tail component	Fels-1 prophage; putative tail assembly protein
AE006468_1132016	AAL19981.1	8896	COG4723	Phage-related protein, tail component	Gifsy-2 prophage; probable tail assembly protein
AE006468_995580	AAL19861.1	21116	COG4733	Phage-related protein, tail component	Fels-1 prophage; putative host specificity protein
AE006468_1132792	AAL19982.1	21116	COG4733	Phage-related protein, tail component	Gifsy-2 prophage; host specificity protein J, phage lambda
AE006468_2737516	AAL21484.1	21116	COG4733	Phage-related protein, tail component	Gifsy-1 prophage protein
AE006468_988625	AAL19854.1	17665	COG5281	Phage-related minor tail protein	Fels-1 prophage; putative minor tail protein
AE006468_1126009	AAL19975.1	17665	COG5281	Phage-related minor tail protein	Gifsy-2 prophage; probable minor tail protein
AE006468_2743185	AAL21489.1	17665	COG5281	Phage-related minor tail protein	Gifsy-1 prophage protein

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