| All COGs for staphylococcusaureussubsp_n315 : R |
| Genes (#) | COG | COG description |
| 1 | COG0300 | Short-chain dehydrogenases of various substrate specificities |
| 9 | COG0477 | Permeases of the major facilitator superfamily |
| 3 | COG0488 | ATPase components of ABC transporters with duplicated ATPase domains |
| 1 | COG0491 | Zn-dependent hydrolases, including glyoxylases |
| 3 | COG0523 | Putative GTPases (G3E family) |
| 5 | COG0561 | Predicted hydrolases of the HAD superfamily |
| 2 | COG0579 | Predicted dehydrogenase |
| 2 | COG0595 | Predicted hydrolase of the metallo-beta-lactamase superfamily |
| 2 | COG0604 | NADPH:quinone reductase and related Zn-dependent oxidoreductases |
| 2 | COG0628 | Predicted permease |
| 1 | COG0637 | Predicted phosphatase/phosphohexomutase |
| 3 | COG0656 | Aldo/keto reductases, related to diketogulonate reductase |
| 2 | COG0673 | Predicted dehydrogenases and related proteins |
| 2 | COG0730 | Predicted permeases |
| 2 | COG1011 | Predicted hydrolase (HAD superfamily) |
| 6 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
| 4 | COG1052 | Lactate dehydrogenase and related dehydrogenases |
| 4 | COG1063 | Threonine dehydrogenase and related Zn-dependent dehydrogenases |
| 1 | COG1064 | Zn-dependent alcohol dehydrogenases |
| 2 | COG1075 | Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold |
| 1 | COG1123 | ATPase components of various ABC-type transport systems, contain duplicated ATPase |
| 1 | COG1253 | Hemolysins and related proteins containing CBS domains |
| 4 | COG1473 | Metal-dependent amidase/aminoacylase/carboxypeptidase |
| 2 | COG1597 | Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase |
| 2 | COG1647 | Esterase/lipase |
| 5 | COG1708 | Predicted nucleotidyltransferases |
| 1 | COG1823 | Predicted Na+/dicarboxylate symporter |
| 2 | COG1853 | Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family |
| 1 | COG2130 | Putative NADP-dependent oxidoreductases |
| 2 | COG2329 | Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides |
| 2 | COG2514 | Predicted ring-cleavage extradiol dioxygenase |
| 1 | COG3443 | Predicted periplasmic or secreted protein |
| 2 | COG3641 | Predicted membrane protein, putative toxin regulator |
| 6 | COG3942 | Surface antigen |
| 1 | COG4152 | ABC-type uncharacterized transport system, ATPase component |
| 1 | COG4221 | Short-chain alcohol dehydrogenase of unknown specificity |
| 1 | COG4619 | ABC-type uncharacterized transport system, ATPase component |
| 1 | COG4989 | Predicted oxidoreductase |
| Included Genes in staphylococcusaureussubsp_n315 : R |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| BA000018_1539603 | BAB42595.1 | 32843 | COG0300 | Short-chain dehydrogenases of various substrate specificities | |
| BA000018_2494320 | BAB43524.1 | 13376 | COG0477 | Permeases of the major facilitator superfamily | |
| BA000018_2410110 | BAB43447.1 | 13376 | COG0477 | Permeases of the major facilitator superfamily | TcaB protein |
| BA000018_2237543 | BAB43259.1 | 18467 | COG0477 | Permeases of the major facilitator superfamily | |
| BA000018_2406617 | BAB43444.1 | 18467 | COG0477 | Permeases of the major facilitator superfamily | |
| BA000018_2471701 | BAB43505.1 | 18467 | COG0477 | Permeases of the major facilitator superfamily | |
| BA000018_111614 | BAB41318.1 | 5858 | COG0477 | Permeases of the major facilitator superfamily | |
| BA000018_2507787 | BAB43535.1 | 5858 | COG0477 | Permeases of the major facilitator superfamily | |
| BA000018_1470200 | BAB42529.1 | 5858 | COG0477 | Permeases of the major facilitator superfamily | Blt-like protein |
| BA000018_317324 | BAB41487.1 | 5858 | COG0477 | Permeases of the major facilitator superfamily | |
| BA000018_768456 | BAB41908.1 | 35629 | COG0488 | ATPase components of ABC transporters with duplicated ATPase domains | |
| BA000018_2090307 | BAB43134.1 | 35629 | COG0488 | ATPase components of ABC transporters with duplicated ATPase domains | hypothetical ABC transporter ATP-binding protein |
| BA000018_1397080 | BAB42484.1 | 35629 | COG0488 | ATPase components of ABC transporters with duplicated ATPase domains | |
| BA000018_92616 | BAB41302.1 | 1149 | COG0491 | Zn-dependent hydrolases, including glyoxylases | conserved hypothetical protein |
| BA000018_2657943 | BAB43673.1 | 9484 | COG0523 | Putative GTPases (G3E family) | |
| BA000018_468137 | BAB41639.1 | 9484 | COG0523 | Putative GTPases (G3E family) | conserved hypothetical protein |
| BA000018_736087 | BAB41875.1 | 9484 | COG0523 | Putative GTPases (G3E family) | |
| BA000018_2208144 | BAB43245.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | conserved hypothetical protein |
| BA000018_1328813 | BAB42424.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | conserved hypothetical protein |
| BA000018_2598232 | BAB43616.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | conserved hypothetical protein |
| BA000018_603329 | BAB41748.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | conserved hypothetical protein |
| BA000018_942833 | BAB42071.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | conserved hypothetical protein |
| BA000018_2420078 | BAB43457.1 | 322 | COG0579 | Predicted dehydrogenase | |
| BA000018_2689091 | BAB43705.1 | 322 | COG0579 | Predicted dehydrogenase | malate:quinone oxidoreductase |
| BA000018_1066732 | BAB42186.1 | 1570 | COG0595 | Predicted hydrolase of the metallo-beta-lactamase superfamily | conserved hypothetical protein |
| BA000018_1268775 | BAB42370.1 | 1570 | COG0595 | Predicted hydrolase of the metallo-beta-lactamase superfamily | conserved hypotehtical protein |
| BA000018_2259001 | BAB43278.1 | 33297 | COG0604 | NADPH:quinone reductase and related Zn-dependent oxidoreductases | |
| BA000018_2427313 | BAB43462.1 | 33297 | COG0604 | NADPH:quinone reductase and related Zn-dependent oxidoreductases | conserved hypothetical protein |
| BA000018_985001 | BAB42111.1 | 13592 | COG0628 | Predicted permease | conserved hypothetical protein |
| BA000018_1361923 | BAB42451.1 | 13592 | COG0628 | Predicted permease | conserved hypothetical protein |
| BA000018_2374240 | BAB43412.1 | 8313 | COG0637 | Predicted phosphatase/phosphohexomutase | |
| BA000018_2271851 | BAB43292.1 | 33907 | COG0656 | Aldo/keto reductases, related to diketogulonate reductase | |
| BA000018_753254 | BAB41891.1 | 33907 | COG0656 | Aldo/keto reductases, related to diketogulonate reductase | |
| BA000018_1841140 | BAB42874.1 | 33907 | COG0656 | Aldo/keto reductases, related to diketogulonate reductase | |
| BA000018_250117 | BAB41433.1 | 5149 | COG0673 | Predicted dehydrogenases and related proteins | |
| BA000018_249013 | BAB41432.1 | 5149 | COG0673 | Predicted dehydrogenases and related proteins | |
| BA000018_90369 | BAB41299.1 | 3767 | COG0730 | Predicted permeases | conserved hypothetical protein |
| BA000018_53823 | BAB41264.1 | 3767 | COG0730 | Predicted permeases | conserved hypothetical protein |
| BA000018_662115 | BAB41800.1 | 8313 | COG1011 | Predicted hydrolase (HAD superfamily) | |
| BA000018_1153089 | BAB42270.1 | 8313 | COG1011 | Predicted hydrolase (HAD superfamily) | conserved hypothetical protein |
| BA000018_2655134 | BAB43670.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
| BA000018_1214743 | BAB42326.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | 3-oxoacyl-reductase |
| BA000018_1276371 | BAB42375.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
| BA000018_2382754 | BAB43420.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
| BA000018_141023 | BAB41341.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | acetoinreductase |
| BA000018_2537697 | BAB43563.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
| BA000018_2635605 | BAB43650.1 | 21404 | COG1052 | Lactate dehydrogenase and related dehydrogenases | |
| BA000018_2358178 | BAB43397.1 | 21404 | COG1052 | Lactate dehydrogenase and related dehydrogenases | |
| BA000018_2596930 | BAB43615.1 | 21404 | COG1052 | Lactate dehydrogenase and related dehydrogenases | D-specific D-2-hydroxyacid dehydrogenase |
| BA000018_896909 | BAB42030.1 | 21404 | COG1052 | Lactate dehydrogenase and related dehydrogenases | |
| BA000018_298950 | BAB41470.1 | 12901 | COG1063 | Threonine dehydrogenase and related Zn-dependent dehydrogenases | |
| BA000018_293627 | BAB41466.1 | 12901 | COG1063 | Threonine dehydrogenase and related Zn-dependent dehydrogenases | |
| BA000018_291347 | BAB41464.1 | 33297 | COG1063 | Threonine dehydrogenase and related Zn-dependent dehydrogenases | |
| BA000018_290120 | BAB41462.1 | 33297 | COG1063 | Threonine dehydrogenase and related Zn-dependent dehydrogenases | sorbitol dehydrogenase |
| BA000018_655557 | BAB41794.1 | 33297 | COG1064 | Zn-dependent alcohol dehydrogenases | alcohol dehydrogenase I |
| BA000018_365458 | BAB41533.1 | 3968 | COG1075 | Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold | glycerol ester hydrolase |
| BA000018_2774247 | BAB43769.1 | 3968 | COG1075 | Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold | triacylglycerol lipase precursor |
| BA000018_233345 | BAB41420.1 | 35629 | COG1123 | ATPase components of various ABC-type transport systems, contain duplicated ATPase | oligopeptide transport ATP-binding protein |
| BA000018_751683 | BAB41890.1 | 12775 | COG1253 | Hemolysins and related proteins containing CBS domains | |
| BA000018_2383746 | BAB43421.1 | 4192 | COG1473 | Metal-dependent amidase/aminoacylase/carboxypeptidase | |
| BA000018_592256 | BAB41738.1 | 4192 | COG1473 | Metal-dependent amidase/aminoacylase/carboxypeptidase | |
| BA000018_110434 | BAB41317.1 | 4192 | COG1473 | Metal-dependent amidase/aminoacylase/carboxypeptidase | |
| BA000018_1404498 | BAB42490.1 | 4192 | COG1473 | Metal-dependent amidase/aminoacylase/carboxypeptidase | hippurate hydrolase |
| BA000018_1960373 | BAB42984.1 | 35324 | COG1597 | Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase | conserved hypothetical protein |
| BA000018_777890 | BAB41914.1 | 35324 | COG1597 | Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase | |
| BA000018_477047 | BAB41646.1 | 105 | COG1647 | Esterase/lipase | |
| BA000018_840074 | BAB41967.1 | 105 | COG1647 | Esterase/lipase | |
| BA000018_2201050 | BAB43236.1 | 6746 | COG1708 | Predicted nucleotidyltransferases | O-nucleotidylltransferase(9) |
| BA000018_1686721 | BAB42747.1 | 6746 | COG1708 | Predicted nucleotidyltransferases | O-nucleotidylltransferase(9) |
| BA000018_870517 | BAB42002.1 | 6746 | COG1708 | Predicted nucleotidyltransferases | O-nucleotidylltransferase(9) |
| BA000018_2673392 | BAB43690.1 | 6746 | COG1708 | Predicted nucleotidyltransferases | O-nucleotidylltransferase(9) |
| BA000018_56859 | BAB41267.1 | 6746 | COG1708 | Predicted nucleotidyltransferases | O-nucleotidylltransferase(9) |
| BA000018_424445 | BAB41595.1 | 1645 | COG1823 | Predicted Na+/dicarboxylate symporter | |
| BA000018_2762612 | BAB43753.1 | 9389 | COG1853 | Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family | conserved hypothetical protein |
| BA000018_2764885 | BAB43757.1 | 9389 | COG1853 | Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family | conserved hypothetical protein |
| BA000018_2260243 | BAB43279.1 | 33297 | COG2130 | Putative NADP-dependent oxidoreductases | |
| BA000018_184042 | BAB41380.1 | 744 | COG2329 | Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides | conserved hypothetical protein |
| BA000018_1112495 | BAB42232.1 | 744 | COG2329 | Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides | conserved hypothetical protein |
| BA000018_1174354 | BAB42289.1 | 530 | COG2514 | Predicted ring-cleavage extradiol dioxygenase | conserved hypothetical protein |
| BA000018_2595125 | BAB43613.1 | 530 | COG2514 | Predicted ring-cleavage extradiol dioxygenase | conserved hypothetical protein |
| BA000018_2464159 | BAB43496.1 | 31632 | COG3443 | Predicted periplasmic or secreted protein | |
| BA000018_1913161 | BAB42945.1 | 32987 | COG3641 | Predicted membrane protein, putative toxin regulator | |
| BA000018_2649435 | BAB43661.1 | 32987 | COG3641 | Predicted membrane protein, putative toxin regulator | |
| BA000018_2643910 | BAB43657.1 | 16217 | COG3942 | Surface antigen | |
| BA000018_2357317 | BAB43396.1 | 16217 | COG3942 | Surface antigen | |
| BA000018_2352596 | BAB43391.1 | 16217 | COG3942 | Surface antigen | |
| BA000018_2616652 | BAB43635.1 | 16217 | COG3942 | Surface antigen | |
| BA000018_810776 | BAB41943.1 | 22603 | COG3942 | Surface antigen | conserved hypothetical protein |
| BA000018_484941 | BAB41653.1 | 22603 | COG3942 | Surface antigen | |
| BA000018_2397120 | BAB43433.1 | 35629 | COG4152 | ABC-type uncharacterized transport system, ATPase component | |
| BA000018_2543070 | BAB43569.1 | 32843 | COG4221 | Short-chain alcohol dehydrogenase of unknown specificity | |
| BA000018_2520153 | BAB43545.1 | 35629 | COG4619 | ABC-type uncharacterized transport system, ATPase component | |
| BA000018_737116 | BAB41876.1 | 33907 | COG4989 | Predicted oxidoreductase | |
| Excluded Genes in staphylococcusaureussubsp_n315 : R |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| BA000018_861797 | BAB41990.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | |
| BA000018_652698 | BAB41791.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | conserved hypothetical protein |
| BA000018_706687 | BAB41845.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | conserved hypothetical protein |
| BA000018_2095540 | BAB43137.1 | 34290 | COG0456 | Acetyltransferases | |
| BA000018_2198997 | BAB43234.1 | 13901 | COG0500 | SAM-dependent methyltransferases | hypothetical protein |
| BA000018_2671339 | BAB43688.1 | 13901 | COG0500 | SAM-dependent methyltransferases | hypothetical protein |
| BA000018_1684668 | BAB42745.1 | 13901 | COG0500 | SAM-dependent methyltransferases | hypothetical protein |
| BA000018_872690 | BAB42004.1 | 13901 | COG0500 | SAM-dependent methyltransferases | hypothetical protein within Tn554 |
| BA000018_54806 | BAB41265.1 | 13901 | COG0500 | SAM-dependent methyltransferases | hypothetical protein in transposon Tn554 |
