| All COGs for listeriainnocua_clip11262 : R |
| Genes (#) | COG | COG description |
| 2 | COG0110 | Acetyltransferase (isoleucine patch superfamily) |
| 2 | COG0300 | Short-chain dehydrogenases of various substrate specificities |
| 2 | COG0388 | Predicted amidohydrolase |
| 9 | COG0477 | Permeases of the major facilitator superfamily |
| 5 | COG0488 | ATPase components of ABC transporters with duplicated ATPase domains |
| 2 | COG0517 | FOG: CBS domain |
| 1 | COG0546 | Predicted phosphatases |
| 12 | COG0561 | Predicted hydrolases of the HAD superfamily |
| 2 | COG0595 | Predicted hydrolase of the metallo-beta-lactamase superfamily |
| 3 | COG0604 | NADPH:quinone reductase and related Zn-dependent oxidoreductases |
| 4 | COG0628 | Predicted permease |
| 3 | COG0637 | Predicted phosphatase/phosphohexomutase |
| 4 | COG0656 | Aldo/keto reductases, related to diketogulonate reductase |
| 5 | COG0673 | Predicted dehydrogenases and related proteins |
| 7 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
| 1 | COG1052 | Lactate dehydrogenase and related dehydrogenases |
| 3 | COG1063 | Threonine dehydrogenase and related Zn-dependent dehydrogenases |
| 2 | COG1162 | Predicted GTPases |
| 2 | COG1235 | Metal-dependent hydrolases of the beta-lactamase superfamily I |
| 3 | COG1253 | Hemolysins and related proteins containing CBS domains |
| 2 | COG1408 | Predicted phosphohydrolases |
| 4 | COG1473 | Metal-dependent amidase/aminoacylase/carboxypeptidase |
| 3 | COG1597 | Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase |
| 2 | COG1647 | Esterase/lipase |
| 2 | COG2070 | Dioxygenases related to 2-nitropropane dioxygenase |
| 2 | COG2244 | Membrane protein involved in the export of O-antigen and teichoic acid |
| 3 | COG2252 | Permeases |
| 2 | COG2333 | Predicted hydrolase (metallo-beta-lactamase superfamily) |
| 1 | COG3845 | ABC-type uncharacterized transport systems, ATPase components |
| 1 | COG4152 | ABC-type uncharacterized transport system, ATPase component |
| 1 | COG4221 | Short-chain alcohol dehydrogenase of unknown specificity |
| 3 | COG4814 | Uncharacterized protein with an alpha/beta hydrolase fold |
| 2 | COG4821 | Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain |
| 1 | COG4989 | Predicted oxidoreductase |
| Included Genes in listeriainnocua_clip11262 : R |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AL592022_460934 | CAC95683.1 | 3239 | COG0110 | Acetyltransferase (isoleucine patch superfamily) | |
| AL592022_699460 | CAC95901.1 | 3239 | COG0110 | Acetyltransferase (isoleucine patch superfamily) | |
| AL592022_2097675 | CAC97313.1 | 32843 | COG0300 | Short-chain dehydrogenases of various substrate specificities | |
| AL592022_1631693 | CAC96852.1 | 32843 | COG0300 | Short-chain dehydrogenases of various substrate specificities | |
| AL592022_323725 | CAC95543.1 | 20238 | COG0388 | Predicted amidohydrolase | |
| AL592022_810915 | CAC96017.1 | 20238 | COG0388 | Predicted amidohydrolase | |
| AL592022_2374354 | CAC97566.1 | 13026 | COG0477 | Permeases of the major facilitator superfamily | |
| AL592022_2375722 | CAC97567.1 | 13026 | COG0477 | Permeases of the major facilitator superfamily | |
| AL592022_2753936 | CAC97959.1 | 18467 | COG0477 | Permeases of the major facilitator superfamily | |
| AL592022_539786 | CAC95751.1 | 18467 | COG0477 | Permeases of the major facilitator superfamily | |
| AL592022_1667633 | CAC96889.1 | 18467 | COG0477 | Permeases of the major facilitator superfamily | |
| AL592022_2502660 | CAC97703.1 | 1962 | COG0477 | Permeases of the major facilitator superfamily | |
| AL592022_2897441 | CAC98110.1 | 1962 | COG0477 | Permeases of the major facilitator superfamily | |
| AL592022_1003456 | CAC96211.1 | 32899 | COG0477 | Permeases of the major facilitator superfamily | |
| AL592022_2999980 | CAC98202.1 | 32899 | COG0477 | Permeases of the major facilitator superfamily | |
| AL592022_2198765 | CAC97408.1 | 35629 | COG0488 | ATPase components of ABC transporters with duplicated ATPase domains | |
| AL592022_949848 | CAC96152.1 | 35629 | COG0488 | ATPase components of ABC transporters with duplicated ATPase domains | |
| AL592022_1469929 | CAC96701.1 | 35629 | COG0488 | ATPase components of ABC transporters with duplicated ATPase domains | |
| AL592022_2003281 | CAC97219.1 | 35629 | COG0488 | ATPase components of ABC transporters with duplicated ATPase domains | |
| AL592022_2921307 | CAC98128.1 | 35629 | COG0488 | ATPase components of ABC transporters with duplicated ATPase domains | |
| AL592022_170062 | CAC95412.1 | 3694 | COG0517 | FOG: CBS domain | |
| AL592022_2918964 | CAC98126.1 | 3694 | COG0517 | FOG: CBS domain | |
| AL592022_2640997 | CAC97851.1 | 8313 | COG0546 | Predicted phosphatases | |
| AL592022_2738800 | CAC97947.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_2395504 | CAC97591.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_449152 | CAC95673.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_315123 | CAC95535.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_2344039 | CAC97539.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_2864743 | CAC98073.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_2470556 | CAC97680.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_698420 | CAC95900.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_31338 | CAC95262.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_186768 | CAC95429.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_311870 | CAC95531.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_1049378 | CAC96259.1 | 24226 | COG0561 | Predicted hydrolases of the HAD superfamily | |
| AL592022_1047000 | CAC96257.1 | 1570 | COG0595 | Predicted hydrolase of the metallo-beta-lactamase superfamily | |
| AL592022_1473700 | CAC96704.1 | 1570 | COG0595 | Predicted hydrolase of the metallo-beta-lactamase superfamily | |
| AL592022_789465 | CAC95999.1 | 33297 | COG0604 | NADPH:quinone reductase and related Zn-dependent oxidoreductases | |
| AL592022_2736342 | CAC97944.1 | 33297 | COG0604 | NADPH:quinone reductase and related Zn-dependent oxidoreductases | |
| AL592022_651989 | CAC95854.1 | 33297 | COG0604 | NADPH:quinone reductase and related Zn-dependent oxidoreductases | |
| AL592022_622246 | CAC95825.1 | 13592 | COG0628 | Predicted permease | |
| AL592022_938039 | CAC96140.1 | 13592 | COG0628 | Predicted permease | |
| AL592022_975351 | CAC96179.1 | 331 | COG0628 | Predicted permease | |
| AL592022_1457696 | CAC96689.1 | 331 | COG0628 | Predicted permease | |
| AL592022_2984019 | CAC98189.1 | 8313 | COG0637 | Predicted phosphatase/phosphohexomutase | |
| AL592022_2949544 | CAC98155.1 | 8313 | COG0637 | Predicted phosphatase/phosphohexomutase | |
| AL592022_2389048 | CAC97582.1 | 8313 | COG0637 | Predicted phosphatase/phosphohexomutase | |
| AL592022_2865709 | CAC98074.1 | 33907 | COG0656 | Aldo/keto reductases, related to diketogulonate reductase | |
| AL592022_2766671 | CAC97965.1 | 33907 | COG0656 | Aldo/keto reductases, related to diketogulonate reductase | |
| AL592022_846721 | CAC96051.1 | 33907 | COG0656 | Aldo/keto reductases, related to diketogulonate reductase | |
| AL592022_2382507 | CAC97576.1 | 33907 | COG0656 | Aldo/keto reductases, related to diketogulonate reductase | |
| AL592022_2951703 | CAC98157.1 | 21025 | COG0673 | Predicted dehydrogenases and related proteins | |
| AL592022_1842242 | CAC97068.1 | 21025 | COG0673 | Predicted dehydrogenases and related proteins | |
| AL592022_316061 | CAC95536.1 | 21025 | COG0673 | Predicted dehydrogenases and related proteins | |
| AL592022_2987970 | CAC98192.1 | 5149 | COG0673 | Predicted dehydrogenases and related proteins | |
| AL592022_2286105 | CAC97494.1 | 5149 | COG0673 | Predicted dehydrogenases and related proteins | |
| AL592022_2967835 | CAC98173.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
| AL592022_2297962 | CAC97506.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
| AL592022_702741 | CAC95906.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
| AL592022_1935770 | CAC97151.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
| AL592022_1803704 | CAC97027.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
| AL592022_1428372 | CAC96662.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
| AL592022_377415 | CAC95595.1 | 32843 | COG1028 | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
| AL592022_74988 | CAC95303.1 | 21404 | COG1052 | Lactate dehydrogenase and related dehydrogenases | |
| AL592022_2828578 | CAC98039.1 | 33297 | COG1063 | Threonine dehydrogenase and related Zn-dependent dehydrogenases | |
| AL592022_2827545 | CAC98038.1 | 33297 | COG1063 | Threonine dehydrogenase and related Zn-dependent dehydrogenases | |
| AL592022_527362 | CAC95738.1 | 33297 | COG1063 | Threonine dehydrogenase and related Zn-dependent dehydrogenases | |
| AL592022_1368349 | CAC96600.1 | 9467 | COG1162 | Predicted GTPases | |
| AL592022_1947004 | CAC97163.1 | 9467 | COG1162 | Predicted GTPases | |
| AL592022_1753291 | CAC96985.1 | 11324 | COG1235 | Metal-dependent hydrolases of the beta-lactamase superfamily I | |
| AL592022_1254758 | CAC96474.1 | 11324 | COG1235 | Metal-dependent hydrolases of the beta-lactamase superfamily I | |
| AL592022_2895052 | CAC98107.1 | 12775 | COG1253 | Hemolysins and related proteins containing CBS domains | |
| AL592022_2521936 | CAC97725.1 | 12775 | COG1253 | Hemolysins and related proteins containing CBS domains | |
| AL592022_2368019 | CAC97561.1 | 12775 | COG1253 | Hemolysins and related proteins containing CBS domains | |
| AL592022_779279 | CAC95989.1 | 15859 | COG1408 | Predicted phosphohydrolases | |
| AL592022_2231367 | CAC97440.1 | 15859 | COG1408 | Predicted phosphohydrolases | |
| AL592022_2972512 | CAC98177.1 | 4192 | COG1473 | Metal-dependent amidase/aminoacylase/carboxypeptidase | |
| AL592022_2969906 | CAC98175.1 | 4192 | COG1473 | Metal-dependent amidase/aminoacylase/carboxypeptidase | |
| AL592022_570028 | CAC95774.1 | 4192 | COG1473 | Metal-dependent amidase/aminoacylase/carboxypeptidase | |
| AL592022_1033060 | CAC96242.1 | 4192 | COG1473 | Metal-dependent amidase/aminoacylase/carboxypeptidase | |
| AL592022_790632 | CAC96000.1 | 35324 | COG1597 | Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase | |
| AL592022_2719933 | CAC97928.1 | 35324 | COG1597 | Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase | |
| AL592022_1876912 | CAC97095.1 | 35324 | COG1597 | Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase | |
| AL592022_2571418 | CAC97773.1 | 105 | COG1647 | Esterase/lipase | |
| AL592022_2570090 | CAC97771.1 | 105 | COG1647 | Esterase/lipase | |
| AL592022_838568 | CAC96042.1 | 23306 | COG2070 | Dioxygenases related to 2-nitropropane dioxygenase | |
| AL592022_2291254 | CAC97501.1 | 23306 | COG2070 | Dioxygenases related to 2-nitropropane dioxygenase | |
| AL592022_1676009 | CAC96897.1 | 5 | COG2244 | Membrane protein involved in the export of O-antigen and teichoic acid | |
| AL592022_1674285 | CAC96896.1 | 5 | COG2244 | Membrane protein involved in the export of O-antigen and teichoic acid | |
| AL592022_1975381 | CAC97189.1 | 311 | COG2252 | Permeases | |
| AL592022_608666 | CAC95814.1 | 311 | COG2252 | Permeases | |
| AL592022_2389850 | CAC97583.1 | 311 | COG2252 | Permeases | |
| AL592022_314264 | CAC95534.1 | 1719 | COG2333 | Predicted hydrolase (metallo-beta-lactamase superfamily) | C-terminal part similar to B. subtilis ComEC protein |
| AL592022_971760 | CAC96175.1 | 1719 | COG2333 | Predicted hydrolase (metallo-beta-lactamase superfamily) | |
| AL592022_1422062 | CAC96657.1 | 35629 | COG3845 | ABC-type uncharacterized transport systems, ATPase components | |
| AL592022_2268076 | CAC97473.1 | 35629 | COG4152 | ABC-type uncharacterized transport system, ATPase component | |
| AL592022_461517 | CAC95684.1 | 32843 | COG4221 | Short-chain alcohol dehydrogenase of unknown specificity | |
| AL592022_2739742 | CAC97948.1 | 20298 | COG4814 | Uncharacterized protein with an alpha/beta hydrolase fold | |
| AL592022_977329 | CAC96181.1 | 20298 | COG4814 | Uncharacterized protein with an alpha/beta hydrolase fold | |
| AL592022_976407 | CAC96180.1 | 20298 | COG4814 | Uncharacterized protein with an alpha/beta hydrolase fold | |
| AL592022_2809261 | CAC98020.1 | 4564 | COG4821 | Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain | |
| AL592022_26267 | CAC95257.1 | 4564 | COG4821 | Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain | |
| AL592022_671629 | CAC95875.1 | 33907 | COG4989 | Predicted oxidoreductase | |
| Excluded Genes in listeriainnocua_clip11262 : R |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AL592022_653025 | CAC95855.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | |
| AL592022_641366 | CAC95843.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | |
| AL592022_2270223 | CAC97475.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | |
| AL592022_2202797 | CAC97411.1 | 34290 | COG0456 | Acetyltransferases | |
| AL592022_1331418 | CAC96565.1 | 33698 | COG2262 | GTPases | |
| AL592022_777957 | CAC95988.1 | 33698 | COG2262 | GTPases | |
