| All COGs for vibriocholerae_n16961_o1 : O |
| Genes (#) | COG | COG description |
| 1 | COG0225 | Peptide methionine sulfoxide reductase |
| 3 | COG0229 | Conserved domain frequently associated with peptide methionine sulfoxide reductase |
| 2 | COG0234 | Co-chaperonin GroES (HSP10) |
| 2 | COG0265 | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
| 2 | COG0443 | Molecular chaperone |
| 1 | COG0450 | Peroxiredoxin |
| 2 | COG0459 | Chaperonin GroEL (HSP60 family) |
| 3 | COG0526 | Thiol-disulfide isomerase and thioredoxins |
| 3 | COG0542 | ATPases with chaperone activity, ATP-binding subunit |
| 4 | COG0555 | ABC-type sulfate transport system, permease component |
| 5 | COG0625 | Glutathione S-transferase |
| 2 | COG0652 | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
| 2 | COG0678 | Peroxiredoxin |
| 2 | COG1047 | FKBP-type peptidyl-prolyl cis-trans isomerases 2 |
| 1 | COG1219 | ATP-dependent protease Clp, ATPase subunit |
| 1 | COG1220 | ATP-dependent protease HslVU (ClpYQ), ATPase subunit |
| 1 | COG1225 | Peroxiredoxin |
| 2 | COG1989 | Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
| 1 | COG2077 | Peroxiredoxin |
| 1 | COG2360 | Leu/Phe-tRNA-protein transferase |
| 1 | COG2935 | Putative arginyl-tRNA:protein arginylyltransferase |
| Included Genes in vibriocholerae_n16961_o1 : O |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE003852_2732684 | AAF95690.1 | 20134 | COG0225 | Peptide methionine sulfoxide reductase | peptide methionine sulfoxide reductase |
| AE003852_2151522 | AAF95146.1 | 20134 | COG0229 | Conserved domain frequently associated with peptide methionine sulfoxide reductase | PilB-related protein |
| AE003853_549956 | AAF96516.1 | 20134 | COG0229 | Conserved domain frequently associated with peptide methionine sulfoxide reductase | peptide methionine sulfoxide reductase |
| AE003852_1310478 | AAF94395.1 | 20134 | COG0229 | Conserved domain frequently associated with peptide methionine sulfoxide reductase | PilB-related protein |
| AE003853_765822 | AAF96717.1 | 21512 | COG0234 | Co-chaperonin GroES (HSP10) | chaperonin, 10 Kd subunit |
| AE003852_2834308 | AAF95806.1 | 21512 | COG0234 | Co-chaperonin GroES (HSP10) | chaperonin, 10 Kd subunit |
| AE003852_599638 | AAF93734.1 | 10272 | COG0265 | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain | protease DO |
| AE003852_598403 | AAF93733.1 | 10272 | COG0265 | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain | protease DegS |
| AE003852_803807 | AAF93917.1 | 2696 | COG0443 | Molecular chaperone | chaperone protein HscA |
| AE003852_920423 | AAF94017.1 | 2696 | COG0443 | Molecular chaperone | dnaK protein |
| AE003852_786666 | AAF93896.1 | 32187 | COG0450 | Peroxiredoxin | antioxidant, AhpC/Tsa family |
| AE003852_2832620 | AAF95805.1 | 849 | COG0459 | Chaperonin GroEL (HSP60 family) | chaperonin, 60 Kd subunit |
| AE003853_766141 | AAF96718.1 | 849 | COG0459 | Chaperonin GroEL (HSP60 family) | chaperonin, 60 Kd subunit |
| AE003852_2207961 | AAF95197.1 | 32187 | COG0526 | Thiol-disulfide isomerase and thioredoxins | thiol:disulfide interchange protein DsbE |
| AE003853_696838 | AAF96650.1 | 33319 | COG0526 | Thiol-disulfide isomerase and thioredoxins | thioredoxin 2 |
| AE003852_317772 | AAF93480.1 | 33319 | COG0526 | Thiol-disulfide isomerase and thioredoxins | thioredoxin |
| AE003852_1213029 | AAF94303.1 | 4410 | COG0542 | ATPases with chaperone activity, ATP-binding subunit | ATP-dependent Clp protease, ATP-binding subunit ClpA |
| AE003853_126178 | AAF96030.1 | 4410 | COG0542 | ATPases with chaperone activity, ATP-binding subunit | clpB protein |
| AE003852_759675 | AAF93876.1 | 4410 | COG0542 | ATPases with chaperone activity, ATP-binding subunit | clpB protein |
| AE003852_1639295 | AAF94678.1 | 18314 | COG0555 | ABC-type sulfate transport system, permease component | ABC transporter, permease protein |
| AE003852_571899 | AAF93708.1 | 18314 | COG0555 | ABC-type sulfate transport system, permease component | sulfate ABC transporter, permease protein |
| AE003853_669051 | AAF96624.1 | 18314 | COG0555 | ABC-type sulfate transport system, permease component | molybdenum ABC transporter, permease protein |
| AE003852_571037 | AAF93707.1 | 18314 | COG0555 | ABC-type sulfate transport system, permease component | sulfate ABC transporter, permease protein |
| AE003853_522368 | AAF96486.1 | 26410 | COG0625 | Glutathione S-transferase | glutathione S-transferase, putative |
| AE003853_430170 | AAF96399.1 | 26410 | COG0625 | Glutathione S-transferase | glutathione S-transferase, putative |
| AE003853_523048 | AAF96487.1 | 26410 | COG0625 | Glutathione S-transferase | glutathione S-transferase, putative |
| AE003852_1434725 | AAF94505.1 | 26410 | COG0625 | Glutathione S-transferase | glutathione S-transferase, putative |
| AE003852_606911 | AAF93744.1 | 26410 | COG0625 | Glutathione S-transferase | stringent starvation protein A |
| AE003852_2453446 | AAF95443.1 | 33435 | COG0652 | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family | peptidyl-prolyl cis-trans isomerase A |
| AE003852_1988801 | AAF94997.1 | 33435 | COG0652 | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family | peptidyl-prolyl cis-trans isomerase B |
| AE003852_1440716 | AAF94508.1 | 32187 | COG0678 | Peroxiredoxin | antioxidant, putative |
| AE003852_2809306 | AAF95778.1 | 32187 | COG0678 | Peroxiredoxin | peroxiredoxin family protein/glutaredoxin |
| AE003852_732230 | AAF93849.1 | 10939 | COG1047 | FKBP-type peptidyl-prolyl cis-trans isomerases 2 | peptidyl-prolyl cis-trans isomerase, FKBP-type |
| AE003852_2773919 | AAF95745.1 | 10939 | COG1047 | FKBP-type peptidyl-prolyl cis-trans isomerases 2 | peptidyl-prolyl cis-trans isomerase, FKBP-type |
| AE003852_2071849 | AAF95069.1 | 3207 | COG1219 | ATP-dependent protease Clp, ATPase subunit | ATP-dependent Clp protease, ATP-binding subunit ClpX |
| AE003852_2841224 | AAF95815.1 | 3207 | COG1220 | ATP-dependent protease HslVU (ClpYQ), ATPase subunit | protease HslVU, ATPase subunit HslU |
| AE003852_2308172 | AAF95305.1 | 32187 | COG1225 | Peroxiredoxin | bacterioferritin comigratory protein |
| AE003852_2600669 | AAF95569.1 | 10766 | COG1989 | Type II secretory pathway, prepilin signal peptidase PulO and related peptidases | leader peptidase PilD |
| AE003852_900726 | AAF94002.1 | 10766 | COG1989 | Type II secretory pathway, prepilin signal peptidase PulO and related peptidases | leader peptidase TcpJ |
| AE003852_885773 | AAF93987.1 | 32187 | COG2077 | Peroxiredoxin | tagD protein |
| AE003852_1872072 | AAF94885.1 | 12091 | COG2360 | Leu/Phe-tRNA-protein transferase | leucyl/phenylalanyl-tRNA--protein transferase |
| AE003852_1872807 | AAF94886.1 | 12091 | COG2935 | Putative arginyl-tRNA:protein arginylyltransferase | arginyl-tRNA-protein transferase-related protein |
| Excluded Genes in vibriocholerae_n16961_o1 : O |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE003853_597218 | AAF96562.1 | 14417 | COG0545 | FKBP-type peptidyl-prolyl cis-trans isomerases 1 | peptidyl-prolyl cis-trans isomerase-related protein |
| AE003852_375590 | AAF93527.1 | 14417 | COG0545 | FKBP-type peptidyl-prolyl cis-trans isomerases 1 | peptidyl-prolyl cis-trans isomerase, FKBP-type |
| AE003852_2749721 | AAF95709.1 | 14417 | COG0545 | FKBP-type peptidyl-prolyl cis-trans isomerases 1 | peptidyl-prolyl cis-trans isomerase, FKBP-type |
| AE003852_2140716 | AAF95137.1 | 34290 | COG1214 | Inactive homolog of metal-dependent proteases, putative molecular chaperone | conserved hypothetical protein |
