| All COGs for salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : O |
| Genes (#) | COG | COG description |
| 3 | COG0071 | Molecular chaperone (small heat shock protein) |
| 1 | COG0225 | Peptide methionine sulfoxide reductase |
| 1 | COG0229 | Conserved domain frequently associated with peptide methionine sulfoxide reductase |
| 3 | COG0265 | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
| 2 | COG0298 | Hydrogenase maturation factor |
| 1 | COG0396 | ABC-type transport system involved in Fe-S cluster assembly, ATPase component |
| 3 | COG0443 | Molecular chaperone |
| 2 | COG0450 | Peroxiredoxin |
| 1 | COG0484 | DnaJ-class molecular chaperone with C-terminal Zn finger domain |
| 2 | COG0501 | Zn-dependent protease with chaperone function |
| 6 | COG0526 | Thiol-disulfide isomerase and thioredoxins |
| 3 | COG0542 | ATPases with chaperone activity, ATP-binding subunit |
| 1 | COG0555 | ABC-type sulfate transport system, permease component |
| 8 | COG0625 | Glutathione S-transferase |
| 2 | COG0652 | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
| 2 | COG0695 | Glutaredoxin and related proteins |
| 2 | COG0755 | ABC-type transport system involved in cytochrome c biogenesis, permease component |
| 2 | COG1047 | FKBP-type peptidyl-prolyl cis-trans isomerases 2 |
| 2 | COG1138 | Cytochrome c biogenesis factor |
| 3 | COG1180 | Pyruvate-formate lyase-activating enzyme |
| 1 | COG1219 | ATP-dependent protease Clp, ATPase subunit |
| 1 | COG1220 | ATP-dependent protease HslVU (ClpYQ), ATPase subunit |
| 1 | COG1225 | Peroxiredoxin |
| 2 | COG1397 | ADP-ribosylglycohydrolase |
| 1 | COG2077 | Peroxiredoxin |
| 1 | COG2214 | DnaJ-class molecular chaperone |
| 2 | COG2332 | Cytochrome c-type biogenesis protein CcmE |
| 2 | COG2386 | ABC-type transport system involved in cytochrome c biogenesis, permease component |
| 2 | COG3088 | Uncharacterized protein involved in biosynthesis of c-type cytochromes |
| 2 | COG4133 | ABC-type transport system involved in cytochrome c biogenesis, ATPase component |
| 1 | COG4235 | Cytochrome c biogenesis factor |
| 1 | COG4987 | ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components |
| 1 | COG4988 | ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
| Included Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : O |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE006468_4009916 | AAL22668.1 | 5267 | COG0071 | Molecular chaperone (small heat shock protein) | small heat shock protein |
| AE006468_1335516 | AAL20177.1 | 5267 | COG0071 | Molecular chaperone (small heat shock protein) | putative molecular chaperone (small heat shock protein) |
| AE006468_4009378 | AAL22667.1 | 5267 | COG0071 | Molecular chaperone (small heat shock protein) | small heat shock protein |
| AE006468_4645202 | AAL23228.1 | 20134 | COG0225 | Peptide methionine sulfoxide reductase | peptide methionine sulfoxide reductase |
| AE006468_1370000 | AAL20216.1 | 20134 | COG0229 | Conserved domain frequently associated with peptide methionine sulfoxide reductase | hypothetical protein |
| AE006468_3515417 | AAL22217.1 | 10272 | COG0265 | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain | serine endoprotease |
| AE006468_244492 | AAL19173.1 | 10272 | COG0265 | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain | periplasmic serine protease Do, heat shock protein |
| AE006468_3516877 | AAL22218.1 | 10272 | COG0265 | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain | periplasmic serine endoprotease |
| AE006468_3307202 | AAL22017.1 | 19951 | COG0298 | Hydrogenase maturation factor | hydrogenase-2 operon protein |
| AE006468_3001086 | AAL21736.1 | 19951 | COG0298 | Hydrogenase maturation factor | putative hydrogenase expression/formation protein |
| AE006468_1454196 | AAL20295.1 | 35629 | COG0396 | ABC-type transport system involved in Fe-S cluster assembly, ATPase component | putative transport protein |
| AE006468_2678197 | AAL21433.1 | 2696 | COG0443 | Molecular chaperone | chaperone protein |
| AE006468_11593 | AAL18976.1 | 2696 | COG0443 | Molecular chaperone | chaperone Hsp70 |
| AE006468_722533 | AAL19610.1 | 2696 | COG0443 | Molecular chaperone | putative heatshock protein, homolog of hsp70 in Hsc66 subfamily |
| AE006468_670449 | AAL19559.1 | 32187 | COG0450 | Peroxiredoxin | alkyl hydroperoxide reductase, C22 subunit |
| AE006468_458073 | AAL19356.1 | 32187 | COG0450 | Peroxiredoxin | putative thiol-alkyl hydroperoxide reductase |
| AE006468_13595 | AAL18977.1 | 31509 | COG0484 | DnaJ-class molecular chaperone with C-terminal Zn finger domain | heat shock protein DnaJ |
| AE006468_3238660 | AAL21952.1 | 32746 | COG0501 | Zn-dependent protease with chaperone function | putative Zn-dependent proteases with possible chaperone function |
| AE006468_1064060 | AAL19913.1 | 32746 | COG0501 | Zn-dependent protease with chaperone function | putative Zn-dependent protease with chaperone function |
| AE006468_4204199 | AAL22836.1 | 21616 | COG0526 | Thiol-disulfide isomerase and thioredoxins | periplasmic protein disulfide isomerase I |
| AE006468_3356317 | AAL22067.1 | 21616 | COG0526 | Thiol-disulfide isomerase and thioredoxins | putative thiol-disulfide isomerase and thioredoxin |
| AE006468_4013361 | AAL22672.1 | 32187 | COG0526 | Thiol-disulfide isomerase and thioredoxins | heme lyase disulfide oxidoreductase |
| AE006468_2348433 | AAL21150.1 | 32187 | COG0526 | Thiol-disulfide isomerase and thioredoxins | heme lyase/disulfide oxidoreductase |
| AE006468_4124836 | AAL22765.1 | 33319 | COG0526 | Thiol-disulfide isomerase and thioredoxins | thioredoxin 1 |
| AE006468_2788654 | AAL21543.1 | 33319 | COG0526 | Thiol-disulfide isomerase and thioredoxins | thioredoxin 2, redox factor |
| AE006468_1022698 | AAL19881.1 | 4410 | COG0542 | ATPases with chaperone activity, ATP-binding subunit | ATP-binding subunit of serine protease |
| AE006468_311194 | AAL19228.1 | 4410 | COG0542 | ATPases with chaperone activity, ATP-binding subunit | putative ATPase with chaperone activity; homolog of Yersinia clpB |
| AE006468_2802116 | AAL21550.1 | 4410 | COG0542 | ATPases with chaperone activity, ATP-binding subunit | ATP-dependent protease |
| AE006468_2554592 | AAL21337.1 | 18314 | COG0555 | ABC-type sulfate transport system, permease component | thiosulfate transport protein |
| AE006468_1525740 | AAL20373.1 | 26410 | COG0625 | Glutathione S-transferase | glutathionine S-transferase |
| AE006468_2272979 | AAL21080.1 | 26410 | COG0625 | Glutathione S-transferase | putative glutathione S-transferase |
| AE006468_2460413 | AAL21250.1 | 26410 | COG0625 | Glutathione S-transferase | putative glutathione S-transferase |
| AE006468_3304430 | AAL22014.1 | 26410 | COG0625 | Glutathione S-transferase | putative glutathione S-transferase |
| AE006468_3510553 | AAL22211.1 | 26410 | COG0625 | Glutathione S-transferase | stringent starvation protein A |
| AE006468_3874183 | AAL22543.1 | 26410 | COG0625 | Glutathione S-transferase | putative glutathione S-transferase |
| AE006468_934627 | AAL19798.1 | 26410 | COG0625 | Glutathione S-transferase | putative glutathione S-transferase |
| AE006468_4505131 | AAL23091.1 | 26410 | COG0625 | Glutathione S-transferase | putative glutathione S-transferase |
| AE006468_598468 | AAL19490.1 | 33435 | COG0652 | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family | peptidyl-prolyl cis-trans isomerase B (rotamase B) |
| AE006468_3621222 | AAL22334.1 | 33435 | COG0652 | Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family | peptidyl-prolyl cis-trans isomerase A |
| AE006468_3896547 | AAL22561.1 | 7812 | COG0695 | Glutaredoxin and related proteins | glutaredoxin 3 |
| AE006468_945074 | AAL19808.1 | 7812 | COG0695 | Glutaredoxin and related proteins | redox coenzyme for glutathione-dependent ribonucleotide reductase glutaredoxin1 |
| AE006468_4016528 | AAL22676.1 | 8774 | COG0755 | ABC-type transport system involved in cytochrome c biogenesis, permease component | ABC superfamily (membrane) heme exporter protein |
| AE006468_2351600 | AAL21154.1 | 8774 | COG0755 | ABC-type transport system involved in cytochrome c biogenesis, permease component | heme exporter protein |
| AE006468_3606315 | AAL22318.1 | 10939 | COG1047 | FKBP-type peptidyl-prolyl cis-trans isomerases 2 | FKBP-type peptidyl prolyl cis-trans isomerase |
| AE006468_57344 | AAL19012.1 | 10939 | COG1047 | FKBP-type peptidyl-prolyl cis-trans isomerases 2 | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) |
| AE006468_2348987 | AAL21151.1 | 32815 | COG1138 | Cytochrome c biogenesis factor | cytochrome c-type biogenesis protein |
| AE006468_4013915 | AAL22673.1 | 32815 | COG1138 | Cytochrome c biogenesis factor | cytochrome c-type biogenesis protein |
| AE006468_913785 | AAL19780.1 | 7030 | COG1180 | Pyruvate-formate lyase-activating enzyme | putative pyruvate formate lyase activating enzyme |
| AE006468_1052688 | AAL19904.1 | 7030 | COG1180 | Pyruvate-formate lyase-activating enzyme | pyruvate formate lyase activating enzyme 1 |
| AE006468_4331077 | AAL22954.1 | 7030 | COG1180 | Pyruvate-formate lyase-activating enzyme | putative pyruvate formate lyase activating enzyme 2 |
| AE006468_504085 | AAL19404.1 | 3207 | COG1219 | ATP-dependent protease Clp, ATPase subunit | specificity component of clpA-clpP ATP-dependent serine protease, chaperone |
| AE006468_4299150 | AAL22931.1 | 3207 | COG1220 | ATP-dependent protease HslVU (ClpYQ), ATPase subunit | ATPase component of the HslUV protease |
| AE006468_2605639 | AAL21385.1 | 32187 | COG1225 | Peroxiredoxin | thioredoxin dependent thiol peroxidase |
| AE006468_4277918 | AAL22907.1 | 4079 | COG1397 | ADP-ribosylglycohydrolase | putative ADP-ribosylglycohydrolase |
| AE006468_2237539 | AAL21046.1 | 4079 | COG1397 | ADP-ribosylglycohydrolase | putative glycohydrolase |
| AE006468_1775584 | AAL20599.1 | 32187 | COG2077 | Peroxiredoxin | thiol peroxidase |
| AE006468_1198999 | AAL20044.1 | 31509 | COG2214 | DnaJ-class molecular chaperone | curved DNA-binding protein |
| AE006468_2350915 | AAL21152.1 | 8201 | COG2332 | Cytochrome c-type biogenesis protein CcmE | periplasmic heme-dependent peroxidase |
| AE006468_4015843 | AAL22674.1 | 8201 | COG2332 | Cytochrome c-type biogenesis protein CcmE | periplasmic heme-dependent peroxidase |
| AE006468_2352389 | AAL21155.1 | 32610 | COG2386 | ABC-type transport system involved in cytochrome c biogenesis, permease component | ABC superfamily (membrane) heme exporter protein |
| AE006468_4017317 | AAL22677.1 | 32610 | COG2386 | ABC-type transport system involved in cytochrome c biogenesis, permease component | heme exporter protein |
| AE006468_4519832 | AAL23105.1 | 32815 | COG3088 | Uncharacterized protein involved in biosynthesis of c-type cytochromes | formate-dependent nitrite reductase |
| AE006468_4012321 | AAL22671.1 | 33792 | COG3088 | Uncharacterized protein involved in biosynthesis of c-type cytochromes | putative heme lyase subunit |
| AE006468_2353045 | AAL21156.1 | 35629 | COG4133 | ABC-type transport system involved in cytochrome c biogenesis, ATPase component | ABC superfamily (membrane) heme exporter protein |
| AE006468_4017973 | AAL22678.1 | 35629 | COG4133 | ABC-type transport system involved in cytochrome c biogenesis, ATPase component | heme exporter protein |
| AE006468_2347393 | AAL21149.1 | 33792 | COG4235 | Cytochrome c biogenesis factor | putative heme lyase subunit |
| AE006468_1031626 | AAL19891.1 | 33574 | COG4987 | ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components | cytochrome-related transporter |
| AE006468_1033348 | AAL19892.1 | 33574 | COG4988 | ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components | cytochrome-related transporter |
| Excluded Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : O |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE006468_3604871 | AAL22316.1 | 14417 | COG0545 | FKBP-type peptidyl-prolyl cis-trans isomerases 1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
| AE006468_4633890 | AAL23217.1 | 14417 | COG0545 | FKBP-type peptidyl-prolyl cis-trans isomerases 1 | FKBP-type 22KD peptidyl-prolyl cis-trans isomerase |
| AE006468_983263 | AAL19848.1 | 18546 | COG0740 | Protease subunit of ATP-dependent Clp proteases | Fels-1 prophage; protease subunits of ATP-dependent proteases, ClpP family |
| AE006468_1120666 | AAL19967.1 | 18546 | COG0740 | Protease subunit of ATP-dependent Clp proteases | Gifsy-2 prophage; resembles Clp protease |
| AE006468_1917765 | AAL20735.1 | 34290 | COG1214 | Inactive homolog of metal-dependent proteases, putative molecular chaperone | putative molecular chaperone |
