| All COGs for salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : M |
| Genes (#) | COG | COG description |
| 3 | COG0329 | Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
| 2 | COG0399 | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
| 3 | COG0451 | Nucleoside-diphosphate-sugar epimerases |
| 1 | COG0481 | Membrane GTPase LepA |
| 2 | COG0668 | Small-conductance mechanosensitive channel |
| 2 | COG0739 | Membrane proteins related to metalloendopeptidases |
| 4 | COG0768 | Cell division protein FtsI/penicillin-binding protein 2 |
| 2 | COG0773 | UDP-N-acetylmuramate-alanine ligase |
| 2 | COG0787 | Alanine racemase |
| 3 | COG0791 | Cell wall-associated hydrolases (invasion-associated proteins) |
| 1 | COG0836 | Mannose-1-phosphate guanylyltransferase |
| 4 | COG0845 | Membrane-fusion protein |
| 2 | COG0860 | N-acetylmuramoyl-L-alanine amidase |
| 1 | COG1087 | UDP-glucose 4-epimerase |
| 2 | COG1088 | dTDP-D-glucose 4,6-dehydratase |
| 1 | COG1134 | ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
| 2 | COG1181 | D-alanine-D-alanine ligase and related ATP-grasp enzymes |
| 1 | COG1209 | dTDP-glucose pyrophosphorylase |
| 2 | COG1210 | UDP-glucose pyrophosphorylase |
| 2 | COG1346 | Putative effector of murein hydrolase |
| 2 | COG1442 | Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases |
| 2 | COG1538 | Outer membrane protein |
| 3 | COG1560 | Lauroyl/myristoyl acyltransferase |
| 3 | COG1686 | D-alanyl-D-alanine carboxypeptidase |
| 2 | COG1732 | Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
| 2 | COG1794 | Aspartate racemase |
| 2 | COG2222 | Predicted phosphosugar isomerases |
| 2 | COG4238 | Murein lipoprotein |
| 2 | COG4591 | ABC-type transport system, involved in lipoprotein release, permease component |
| 7 | COG4948 | L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
| Included Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : M |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE006468_2604043 | AAL21383.1 | 33830 | COG0329 | Dihydrodipicolinate synthase/N-acetylneuraminate lyase | dihydrodipicolinate synthase |
| AE006468_3508119 | AAL22208.1 | 33830 | COG0329 | Dihydrodipicolinate synthase/N-acetylneuraminate lyase | N-acetylneuraminate lyase |
| AE006468_3697030 | AAL22392.1 | 33830 | COG0329 | Dihydrodipicolinate synthase/N-acetylneuraminate lyase | putative dihydrodipicolinate synthetase |
| AE006468_2403953 | AAL21198.1 | 23159 | COG0399 | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | putative DegT/DnrJ/EryC1/StrS family |
| AE006468_4133663 | AAL22774.1 | 23159 | COG0399 | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | TDP-4-oxo-6-deoxy-D-glucose transaminase |
| AE006468_2191635 | AAL21012.1 | 15009 | COG0451 | Nucleoside-diphosphate-sugar epimerases | bifunctional GDP fucose synthetase |
| AE006468_3905316 | AAL22569.1 | 15009 | COG0451 | Nucleoside-diphosphate-sugar epimerases | ADP-L-glycero-D-mannoheptose-6-epimerase |
| AE006468_1006514 | AAL19868.1 | 15009 | COG0451 | Nucleoside-diphosphate-sugar epimerases | putative nucleoside-diphosphate-sugar epimerase |
| AE006468_2726772 | AAL21477.1 | 1836 | COG0481 | Membrane GTPase LepA | GTP-binding elongation factor |
| AE006468_4313424 | AAL22942.1 | 23016 | COG0668 | Small-conductance mechanosensitive channel | putative inner membrane protein |
| AE006468_3228424 | AAL21942.1 | 23016 | COG0668 | Small-conductance mechanosensitive channel | putative membrane protein |
| AE006468_3066549 | AAL21805.1 | 14981 | COG0739 | Membrane proteins related to metalloendopeptidases | lipoprotein |
| AE006468_3197575 | AAL21913.1 | 14981 | COG0739 | Membrane proteins related to metalloendopeptidases | putative metalloendopeptidase |
| AE006468_702023 | AAL19591.1 | 21730 | COG0768 | Cell division protein FtsI/penicillin-binding protein 2 | cell elongation specific transpeptidase of penicillin-binding protein 2 (peptidoglycan synthetase) |
| AE006468_2004519 | AAL20826.1 | 21730 | COG0768 | Cell division protein FtsI/penicillin-binding protein 2 | putative penicillin-binding protein |
| AE006468_141726 | AAL19086.1 | 31664 | COG0768 | Cell division protein FtsI/penicillin-binding protein 2 | division specific transpeptidase |
| AE006468_1933582 | AAL20751.1 | 31664 | COG0768 | Cell division protein FtsI/penicillin-binding protein 2 | putative penicillin-binding protein-3 |
| AE006468_4656671 | AAL23236.1 | 31870 | COG0773 | UDP-N-acetylmuramate-alanine ligase | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase |
| AE006468_151143 | AAL19093.1 | 31870 | COG0773 | UDP-N-acetylmuramate-alanine ligase | L-alanine adding enzyme |
| AE006468_4468038 | AAL23071.1 | 25522 | COG0787 | Alanine racemase | biosynthetic alanine racemase 1 |
| AE006468_1901605 | AAL20717.1 | 25522 | COG0787 | Alanine racemase | alanine racemase 2 |
| AE006468_1510121 | AAL20354.1 | 20922 | COG0791 | Cell wall-associated hydrolases (invasion-associated proteins) | putative cell wall-associated hydrolase |
| AE006468_1422020 | AAL20268.1 | 20922 | COG0791 | Cell wall-associated hydrolases (invasion-associated proteins) | lipoprotein |
| AE006468_2313658 | AAL21117.1 | 20922 | COG0791 | Cell wall-associated hydrolases (invasion-associated proteins) | putative lipoprotein |
| AE006468_2163853 | AAL20988.1 | 34716 | COG0836 | Mannose-1-phosphate guanylyltransferase | mannose-1-phosphate guanylyltransferase |
| AE006468_2214284 | AAL21030.1 | 33402 | COG0845 | Membrane-fusion protein | putative HlyD family secretion protein |
| AE006468_3561104 | AAL22259.1 | 33402 | COG0845 | Membrane-fusion protein | transmembrane protein affecting septum formation and cell membrane permeability |
| AE006468_397057 | AAL19306.1 | 33402 | COG0845 | Membrane-fusion protein | putative cation efflux pump |
| AE006468_532419 | AAL19430.1 | 33402 | COG0845 | Membrane-fusion protein | acridine efflux pump |
| AE006468_4600364 | AAL23178.1 | 20185 | COG0860 | N-acetylmuramoyl-L-alanine amidase | N-acetylmuramoyl-l-alanine amidase II |
| AE006468_3141356 | AAL21867.1 | 20185 | COG0860 | N-acetylmuramoyl-L-alanine amidase | N-acetylmuramoyl-L-alanine amidase |
| AE006468_840581 | AAL19714.1 | 15009 | COG1087 | UDP-glucose 4-epimerase | UDP-galactose 4-epimerase |
| AE006468_4131679 | AAL22771.1 | 15009 | COG1088 | dTDP-D-glucose 4,6-dehydratase | dTDP-glucose 4,6-dehydratase |
| AE006468_2177495 | AAL21001.1 | 15009 | COG1088 | dTDP-D-glucose 4,6-dehydratase | dTDP-glucose 4,6 dehydratase |
| AE006468_788110 | AAL19667.1 | 35629 | COG1134 | ABC-type polysaccharide/polyol phosphate transport system, ATPase component | putative ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
| AE006468_152611 | AAL19094.1 | 16604 | COG1181 | D-alanine-D-alanine ligase and related ATP-grasp enzymes | D-alanine-D-alanine ligase B |
| AE006468_433543 | AAL19334.1 | 16604 | COG1181 | D-alanine-D-alanine ligase and related ATP-grasp enzymes | D-alanine-D-alanine ligase A |
| AE006468_2175670 | AAL20999.1 | 3828 | COG1209 | dTDP-glucose pyrophosphorylase | dTDP-glucose pyrophosphorylase |
| AE006468_1847828 | AAL20670.1 | 3828 | COG1210 | UDP-glucose pyrophosphorylase | glucose-1-phosphate uridylyltransferase |
| AE006468_2178957 | AAL21002.1 | 3828 | COG1210 | UDP-glucose pyrophosphorylase | putative glucose-1-phosphate uridylyltransferase, non-catalytic subunit |
| AE006468_4510780 | AAL23096.1 | 2760 | COG1346 | Putative effector of murein hydrolase | putative inner membrane protein |
| AE006468_2278317 | AAL21086.1 | 2760 | COG1346 | Putative effector of murein hydrolase | putative transmembrane protein |
| AE006468_3913515 | AAL22577.1 | 5942 | COG1442 | Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases | UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase |
| AE006468_3912487 | AAL22576.1 | 5942 | COG1442 | Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases | UDP-D-glucose:(galactosyl)lipopolysaccharideglucosyltransferase |
| AE006468_2268829 | AAL21076.1 | 33634 | COG1538 | Outer membrane protein | putative outer membrane efflux protein |
| AE006468_392419 | AAL19304.1 | 33634 | COG1538 | Outer membrane protein | homology to outer membrane efflux protein |
| AE006468_1983992 | AAL20805.1 | 21891 | COG1560 | Lauroyl/myristoyl acyltransferase | myristoyl transferase in lipid A biosynthesis |
| AE006468_2514561 | AAL21301.1 | 21891 | COG1560 | Lauroyl/myristoyl acyltransferase | cold shock-induced palmitoleoyl transferase |
| AE006468_1242616 | AAL20085.1 | 21891 | COG1560 | Lauroyl/myristoyl acyltransferase | lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis |
| AE006468_2136025 | AAL20966.1 | 4276 | COG1686 | D-alanyl-D-alanine carboxypeptidase | DD-carboxypeptidase |
| AE006468_935497 | AAL19799.1 | 4276 | COG1686 | D-alanyl-D-alanine carboxypeptidase | D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a |
| AE006468_698401 | AAL19588.1 | 4276 | COG1686 | D-alanyl-D-alanine carboxypeptidase | D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 |
| AE006468_2260075 | AAL21069.1 | 6054 | COG1732 | Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) | putative ABC superfamily transport protein (bind_prot) |
| AE006468_1570328 | AAL20412.1 | 6054 | COG1732 | Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) | putative periplasmic component |
| AE006468_3174982 | AAL21891.1 | 15403 | COG1794 | Aspartate racemase | putative aspartate racemase |
| AE006468_4764326 | AAL23328.1 | 15403 | COG1794 | Aspartate racemase | putative aspartate racemase |
| AE006468_632187 | AAL19523.1 | 8972 | COG2222 | Predicted phosphosugar isomerases | putative phosphosugar isomerases |
| AE006468_3773376 | AAL22461.1 | 8972 | COG2222 | Predicted phosphosugar isomerases | putative phosphosugar isomerase |
| AE006468_1459379 | AAL20301.1 | 21160 | COG4238 | Murein lipoprotein | murein lipoprotein |
| AE006468_1459057 | AAL20300.1 | 21160 | COG4238 | Murein lipoprotein | putative methyl-accepting chemotaxis protein |
| AE006468_1302568 | AAL20146.1 | 9040 | COG4591 | ABC-type transport system, involved in lipoprotein release, permease component | integral membrane protein ABC transporter |
| AE006468_1304572 | AAL20148.1 | 9040 | COG4591 | ABC-type transport system, involved in lipoprotein release, permease component | integral membrane protein ABC transporter |
| AE006468_4036632 | AAL22692.1 | 28416 | COG4948 | L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily | putative mandelate racemase |
| AE006468_2376757 | AAL21174.1 | 28416 | COG4948 | L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily | putative dehydratase protein |
| AE006468_3110539 | AAL21840.1 | 28416 | COG4948 | L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily | d-glucarate dehydratase |
| AE006468_3891455 | AAL22556.1 | 28416 | COG4948 | L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily | putative mandelate racemase |
| AE006468_1582248 | AAL20424.1 | 28416 | COG4948 | L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily | putative dehydratase |
| AE006468_3111900 | AAL21841.1 | 28416 | COG4948 | L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily | putative d-glucarate dehydratase |
| AE006468_4030635 | AAL22687.1 | 28416 | COG4948 | L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily | galactonate dehydratase |
| Excluded Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : M |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE006468_4425993 | AAL23029.1 | 34292 | COG0463 | Glycosyltransferases involved in cell wall biogenesis | putative phage glycosyltransferase |
| AE006468_616437 | AAL19510.1 | 34292 | COG0463 | Glycosyltransferases involved in cell wall biogenesis | putative glycosyltransferase |
| AE006468_2405113 | AAL21199.1 | 34292 | COG0463 | Glycosyltransferases involved in cell wall biogenesis | putative glycosyl transferase |
| AE006468_2741401 | AAL21486.1 | 7506 | COG0791 | Cell wall-associated hydrolases (invasion-associated proteins) | Gifsy-1 prophage protein |
| AE006468_1678345 | AAL20508.1 | 34290 | COG1247 | Sortase and related acyltransferases | putative acyltransferase |
| AE006468_1549676 | AAL20393.1 | 25417 | COG3203 | Outer membrane protein (porin) | outer membrane protein N |
| AE006468_1655173 | AAL20490.1 | 25417 | COG3203 | Outer membrane protein (porin) | new outer membrane protein |
| AE006468_2077569 | AAL20905.1 | 25417 | COG3203 | Outer membrane protein (porin) | putative porin |
| AE006468_2365443 | AAL21169.1 | 25417 | COG3203 | Outer membrane protein (porin) | outer membrane protein 1b (ib;c) |
| AE006468_364980 | AAL19276.1 | 25417 | COG3203 | Outer membrane protein (porin) | outer membrane pore protein e (e,ic,nmpab) |
| AE006468_1606415 | AAL20449.1 | 25417 | COG3203 | Outer membrane protein (porin) | putative outer membrane protein |
| AE006468_3193102 | AAL21907.1 | 4368 | COG3637 | Opacity protein and related surface antigens | similar to ail and ompX |
| AE006468_992242 | AAL19856.1 | 4368 | COG3637 | Opacity protein and related surface antigens | Fels-1 prophage; ail and ompX Homolog |
| AE006468_1129424 | AAL19977.1 | 4368 | COG3637 | Opacity protein and related surface antigens | Gifsy-2 prophage; attachment and invasion protein homolog |
| AE006468_390388 | AAL19300.1 | 4368 | COG3637 | Opacity protein and related surface antigens | putative outer membrane protein; homolog of ail and ompX |
| AE006468_899534 | AAL19769.1 | 4368 | COG3637 | Opacity protein and related surface antigens | outer membrane protease, receptor for phage OX2 |
| AE006468_1332251 | AAL20174.1 | 4368 | COG3637 | Opacity protein and related surface antigens | reduced macrophage survival protein |
