All COGs for vibriocholerae_n16961_o1 : L
Genes (#)COGCOG description
3COG0084Mg-dependent DNase
2COG0187Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
2COG0188Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
2COG0210Superfamily I DNA and RNA helicases
2COG0328Ribonuclease HI
2COG0415Deoxyribodipyrimidine photolyase
5COG0494NTP pyrophosphohydrolases including oxidative damage repair enzymes
9COG0513Superfamily II DNA and RNA helicases
4COG0776Bacterial nucleoid DNA-binding protein
2COG1199Rad3-related DNA helicases
3COG2003DNA repair proteins

Included Genes in vibriocholerae_n16961_o1 : L
gene_idprotein_idgene_familycogcog_descriptionproduct
AE003852_2168521AAF95162.13753COG0084Mg-dependent DNaseconserved hypothetical protein
AE003852_2509895AAF95496.13753COG0084Mg-dependent DNaseconserved hypothetical protein
AE003852_99867AAF93281.13753COG0084Mg-dependent DNaseconserved hypothetical protein
AE003852_2605598AAF95574.14233COG0187Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunittopoisomerase IV, subunit B
AE003852_11103AAF93193.14233COG0187Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunitDNA gyrase, subunit B
AE003852_1330207AAF94417.11817COG0188Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunitDNA gyrase, subunit A
AE003852_2603309AAF95573.11817COG0188Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunittopoisomerase IV, subunit A
AE003852_194214AAF93366.118279COG0210Superfamily I DNA and RNA helicasesDNA helicase II
AE003852_164408AAF93343.118279COG0210Superfamily I DNA and RNA helicasesATP-dependent DNA helicase Rep
AE003852_2388824AAF95378.131976COG0328Ribonuclease HIribonuclease HI
AE003852_530684AAF93671.131976COG0328Ribonuclease HIribonuclease HI, putative
AE003852_1954789AAF94962.19335COG0415Deoxyribodipyrimidine photolyasedeoxyribodipyrimidine photolyase
AE003853_64102AAF95971.19335COG0415Deoxyribodipyrimidine photolyasedeoxyribodipyrimidine photolyase
AE003852_717080AAF93836.112241COG0494NTP pyrophosphohydrolases including oxidative damage repair enzymesMutT/nudix family protein
AE003852_2559842AAF95535.112241COG0494NTP pyrophosphohydrolases including oxidative damage repair enzymesmutator MutT protein
AE003852_2609692AAF95578.132357COG0494NTP pyrophosphohydrolases including oxidative damage repair enzymesMutT/nudix family protein
AE003852_2895391AAF95861.132357COG0494NTP pyrophosphohydrolases including oxidative damage repair enzymesMutT/nudix family protein
AE003853_708502AAF96662.132357COG0494NTP pyrophosphohydrolases including oxidative damage repair enzymesMutT/nudix family protein
AE003852_1499666AAF94564.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase RhlE
AE003852_705587AAF93826.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase SrmB
AE003852_316344AAF93479.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase RhlB
AE003852_2746119AAF95705.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase DbpA
AE003853_67304AAF95975.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase, DEAD box family
AE003853_220767AAF96116.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase RhlE
AE003853_711450AAF96666.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase, DEAD box family
AE003853_944006AAF96886.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase, DEAD box family
AE003853_746491AAF96702.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase DeaD
AE003852_1300276AAF94381.134486COG0776Bacterial nucleoid DNA-binding proteinintegration host factor, alpha subunit
AE003852_278432AAF93448.134486COG0776Bacterial nucleoid DNA-binding proteinDNA-binding protein HU
AE003852_2063247AAF95062.134486COG0776Bacterial nucleoid DNA-binding proteinintegration host factor, beta subunit
AE003852_2068910AAF95067.134486COG0776Bacterial nucleoid DNA-binding proteinDNA-binding protein HU-beta
AE003852_1994235AAF95003.16067COG1199Rad3-related DNA helicasesATP-dependent helicase, DinG family
AE003852_2141426AAF95138.16067COG1199Rad3-related DNA helicasesATP-dependent helicase, DinG family
AE003852_539531AAF93680.15013COG2003DNA repair proteinsDNA repair protein RadC-related protein
AE003852_225260AAF93393.15013COG2003DNA repair proteinsDNA repair protein RadC
AE003852_1936121AAF94935.15013COG2003DNA repair proteinsDNA repair protein RadC, putative

Excluded Genes in vibriocholerae_n16961_o1 : L
gene_idprotein_idgene_familycogcog_descriptionproduct
AE003852_548780AAF93686.126664COG0582Integrasephage integrase
AE003852_912856AAF94009.126664COG0582Integraseintegrase, phage family
AE003852_1896092AAF94908.126664COG0582Integraseintegrase, phage family
AE003852_2593375AAF95562.132603COG0582Integraseintegrase/recombinase XerD
AE003852_122005AAF93305.132603COG0582Integraseintegrase/recombinase XerC
AE003853_309750AAF96199.132603COG0582Integrasesite-specific recombinase IntI4
AE003852_935917AAF94032.132768COG1943Transposase and inactivated derivativesIS1004 transposase
AE003853_292265AAF96186.132768COG1943Transposase and inactivated derivativesIS1004 transposase
AE003853_428335AAF96396.132768COG1943Transposase and inactivated derivativesIS1004 transposase
AE003853_219825AAF96115.132768COG1943Transposase and inactivated derivativesIS1004 transposase
AE003853_735771AAF96689.133272COG2801Transposase and inactivated derivativestransposase OrfAB, subunit B
AE003852_262667AAF93432.133272COG2801Transposase and inactivated derivativestransposase OrfAB, subunit B
AE003853_357184AAF96278.133272COG2801Transposase and inactivated derivativestransposase OrfAB, subunit B
AE003853_435760AAF96411.133272COG2801Transposase and inactivated derivativestransposase OrfAB, subunit B
AE003852_1583510AAF94633.133272COG2801Transposase and inactivated derivativestransposase OrfAB, subunit B
AE003852_1937519AAF94938.133272COG2801Transposase and inactivated derivativestransposase OrfAB, subunit B
AE003852_1571738AAF94620.127901COG2946Putative phage replication protein RstARstA2 protein
AE003852_1564822AAF94611.127901COG2946Putative phage replication protein RstARstA1 protein
AE003853_736640AAF96690.133231COG2963Transposase and inactivated derivativestransposase OrfAB, subunit A
AE003852_1583160AAF94632.133231COG2963Transposase and inactivated derivativestransposase OrfAB, subunit A
AE003852_262326AAF93431.133231COG2963Transposase and inactivated derivativestransposase OrfAB, subunit A
AE003852_1938388AAF94939.133231COG2963Transposase and inactivated derivativestransposase OrfAB, subunit A
AE003853_358053AAF96279.133231COG2963Transposase and inactivated derivativestransposase OrfAB, subunit A
AE003853_435419AAF96410.133231COG2963Transposase and inactivated derivativestransposase OrfAB, subunit A
AE003853_301670AAF96191.131311COG3039Transposase and inactivated derivatives, IS5 familyIS5 transposase
AE003853_416601AAF96376.131311COG3039Transposase and inactivated derivatives, IS5 familyIS5 transposase

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