| All COGs for salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : L |
| Genes (#) | COG | COG description |
| 3 | COG0084 | Mg-dependent DNase |
| 2 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
| 2 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
| 2 | COG0210 | Superfamily I DNA and RNA helicases |
| 2 | COG0266 | Formamidopyrimidine-DNA glycosylase |
| 7 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes |
| 5 | COG0513 | Superfamily II DNA and RNA helicases |
| 4 | COG0776 | Bacterial nucleoid DNA-binding protein |
| 2 | COG1199 | Rad3-related DNA helicases |
| Included Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE006468_4817980 | AAL23379.1 | 3753 | COG0084 | Mg-dependent DNase | putative hydrolase |
| AE006468_4182134 | AAL22820.1 | 3753 | COG0084 | Mg-dependent DNase | putative hydrolase of PHP superfamily |
| AE006468_1285277 | AAL20131.1 | 3753 | COG0084 | Mg-dependent DNase | putative metal-dependent hydrolase |
| AE006468_4038855 | AAL22694.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | DNA gyrase, subunit B |
| AE006468_3343962 | AAL22055.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | DNA topoisomerase IV, subunit B |
| AE006468_2373711 | AAL21173.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | DNA gyrase, subunit A |
| AE006468_3336947 | AAL22048.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | DNA topoisomerase IV, subunit A |
| AE006468_4155541 | AAL22795.1 | 18279 | COG0210 | Superfamily I DNA and RNA helicases | DNA-dependent ATPase I and helicase II |
| AE006468_4119763 | AAL22762.1 | 18279 | COG0210 | Superfamily I DNA and RNA helicases | rep helicase |
| AE006468_3921131 | AAL22585.1 | 31879 | COG0266 | Formamidopyrimidine-DNA glycosylase | formamidopyrimidine DNA glycosylase |
| AE006468_793925 | AAL19672.1 | 31879 | COG0266 | Formamidopyrimidine-DNA glycosylase | endonuclease VIII |
| AE006468_2402597 | AAL21196.1 | 12241 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | putative NTP pyrophosphohydrolases including oxidative damage repair enzymes |
| AE006468_3162168 | AAL21880.1 | 12241 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | putative invasion protein |
| AE006468_161546 | AAL19101.1 | 12241 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | 7,8-dihydro-8-oxoguanine-triphosphatase |
| AE006468_1380453 | AAL20226.1 | 12241 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | putative mutator MutT protein |
| AE006468_2587089 | AAL21371.1 | 32357 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | putative pyrophosphohydrolase |
| AE006468_3347734 | AAL22059.1 | 32357 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | putative resistance protein |
| AE006468_3649301 | AAL22356.1 | 32357 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | putative NTP pyrophosphohydrolase |
| AE006468_2782903 | AAL21537.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| AE006468_3446185 | AAL22152.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | cysteine sulfinate desulfinase |
| AE006468_885586 | AAL19757.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | putative ATP-dependent RNA helicase |
| AE006468_1748288 | AAL20573.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| AE006468_4123427 | AAL22764.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | putative helicase |
| AE006468_4386709 | AAL22998.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | DNA-binding protein HU-alpha |
| AE006468_508105 | AAL19406.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | DNA-binding protein HU-beta, NS1 (HU-1) |
| AE006468_1067620 | AAL19916.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | integration host factor (IHF), beta subunit |
| AE006468_1419069 | AAL20264.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | integration host factor (IHF), alpha subunit |
| AE006468_1918518 | AAL20736.1 | 6067 | COG1199 | Rad3-related DNA helicases | putative DNA helicase |
| AE006468_887158 | AAL19758.1 | 6067 | COG1199 | Rad3-related DNA helicases | LexA regulated (SOS) repair enzyme |
| Excluded Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE006468_2872688 | AAL21616.1 | 18651 | COG0338 | Site-specific DNA methylase | Fels-2 prophage protein |
| AE006468_3638690 | AAL22346.1 | 18651 | COG0338 | Site-specific DNA methylase | DNA adenine methylase |
| AE006468_2085406 | AAL20912.1 | 22901 | COG0582 | Integrase | putative branched chain amino acid transport protein |
| AE006468_2900439 | AAL21646.1 | 22901 | COG0582 | Integrase | putative integrase |
| AE006468_2905475 | AAL21649.1 | 26664 | COG0582 | Integrase | putative integrase |
| AE006468_2878169 | AAL21626.1 | 26664 | COG0582 | Integrase | Fels-2 prophage protein |
| AE006468_1967026 | AAL20787.1 | 5052 | COG0582 | Integrase | putative phage integrase protein |
| AE006468_1957835 | AAL20776.1 | 5052 | COG0582 | Integrase | putative cytoplasmic protein |
| AE006468_4802792 | AAL23361.1 | 7240 | COG1484 | DNA replication protein | chromosome replication protein |
| AE006468_1107230 | AAL19949.1 | 7240 | COG1484 | DNA replication protein | Gifsy-2 prophage; ATPase involved in DNA replication initiation |
| AE006468_2767108 | AAL21519.1 | 7240 | COG1484 | DNA replication protein | Gifsy-1 prophage protein |
| AE006468_3194318 | AAL21908.1 | 32768 | COG1943 | Transposase and inactivated derivatives | transposase for IS200 |
| AE006468_3635160 | AAL22341.1 | 32768 | COG1943 | Transposase and inactivated derivatives | transposase for IS200 |
| AE006468_1025166 | AAL19882.1 | 32768 | COG1943 | Transposase and inactivated derivatives | IS200 transposase |
| AE006468_2045735 | AAL20869.1 | 32768 | COG1943 | Transposase and inactivated derivatives | transposase for IS200 |
| AE006468_2579331 | AAL21365.1 | 32768 | COG1943 | Transposase and inactivated derivatives | transposase for IS200 |
| AE006468_4559416 | AAL23135.1 | 32768 | COG1943 | Transposase and inactivated derivatives | transposase for IS200 |
| AE006468_2851384 | AAL21589.1 | 33680 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs | Fels-2 prophage protein |
| AE006468_2914842 | AAL21658.1 | 33680 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs | H inversion protein |
| AE006468_2910977 | AAL21655.1 | 33272 | COG2801 | Transposase and inactivated derivatives | putative transposase |
| AE006468_1026087 | AAL19883.1 | 33272 | COG2801 | Transposase and inactivated derivatives | putative integrase protein |
| AE006468_369197 | AAL19280.1 | 33272 | COG2801 | Transposase and inactivated derivatives | putative IS3 transposase |
| AE006468_2622292 | AAL21403.1 | 33272 | COG2801 | Transposase and inactivated derivatives | putative IS3-like transposase |
| AE006468_2906452 | AAL21650.1 | 5535 | COG2801 | Transposase and inactivated derivatives | putative integrase core domain protein |
| AE006468_341178 | AAL19255.1 | 5535 | COG2801 | Transposase and inactivated derivatives | putative integrase core domain |
| AE006468_2907066 | AAL21651.1 | 7800 | COG2801 | Transposase and inactivated derivatives | putative transposase |
| AE006468_340755 | AAL19254.1 | 7800 | COG2801 | Transposase and inactivated derivatives | putative transposase |
| AE006468_614199 | AAL19508.1 | 33231 | COG2963 | Transposase and inactivated derivatives | putative transposase |
| AE006468_2910681 | AAL21654.1 | 33231 | COG2963 | Transposase and inactivated derivatives | putative transposase |
| AE006468_4153787 | AAL22793.1 | 32603 | COG4973 | Site-specific recombinase XerC | putative site-specific integrase/recombinase |
| AE006468_3204425 | AAL21919.1 | 32603 | COG4974 | Site-specific recombinase XerD | site-specific recombinase |
