| All COGs for neisseriameningitidismc58 : L |
| Genes (#) | COG | COG description |
| 2 | COG0084 | Mg-dependent DNase |
| 1 | COG0116 | Predicted N6-adenine-specific DNA methylase |
| 2 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
| 2 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
| 2 | COG0210 | Superfamily I DNA and RNA helicases |
| 2 | COG0513 | Superfamily II DNA and RNA helicases |
| 2 | COG0708 | Exonuclease III |
| 3 | COG0776 | Bacterial nucleoid DNA-binding protein |
| 4 | COG1555 | DNA uptake protein and related DNA-binding proteins |
| 2 | COG2827 | Predicted endonuclease containing a URI domain |
| Included Genes in neisseriameningitidismc58 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE002098_799606 | AAF41184.1 | 3753 | COG0084 | Mg-dependent DNase | conserved hypothetical protein |
| AE002098_1764301 | AAF42035.1 | 3753 | COG0084 | Mg-dependent DNase | conserved hypothetical protein |
| AE002098_467131 | AAF40892.1 | 14072 | COG0116 | Predicted N6-adenine-specific DNA methylase | conserved hypothetical protein |
| AE002098_214197 | AAF40668.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | DNA gyrase subunit B |
| AE002098_1757882 | AAF42030.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | topoisomerase IV subunit B |
| AE002098_1409963 | AAF41750.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | DNA gyrase subunit A |
| AE002098_1665166 | AAF41957.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | topoisomerase IV subunit A |
| AE002098_1490623 | AAF41807.1 | 18279 | COG0210 | Superfamily I DNA and RNA helicases | ATP-dependent DNA helicase |
| AE002098_239387 | AAF40687.1 | 18279 | COG0210 | Superfamily I DNA and RNA helicases | DNA helicase II |
| AE002098_1456827 | AAF41783.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase, putative |
| AE002098_1392170 | AAF41742.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase, putative |
| AE002098_402525 | AAF40839.1 | 33302 | COG0708 | Exonuclease III | exodeoxyribonuclease III |
| AE002098_2203720 | AAF42400.1 | 33302 | COG0708 | Exonuclease III | exodeoxyribonuclease |
| AE002098_761362 | AAF41142.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | integration host factor, alpha subunit |
| AE002098_1234967 | AAF41611.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | DNA-binding protein HU-beta |
| AE002098_1320238 | AAF41677.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | integration host factor, beta subunit |
| AE002098_313104 | AAF40750.1 | 6294 | COG1555 | DNA uptake protein and related DNA-binding proteins | comEA-related protein |
| AE002098_66354 | AAF40526.1 | 6294 | COG1555 | DNA uptake protein and related DNA-binding proteins | hypothetical protein |
| AE002098_1724739 | AAF42006.1 | 6294 | COG1555 | DNA uptake protein and related DNA-binding proteins | comE operon protein 1-related protein |
| AE002098_2131614 | AAF42340.1 | 6294 | COG1555 | DNA uptake protein and related DNA-binding proteins | ComEA-related protein |
| AE002098_252182 | AAF40702.1 | 19328 | COG2827 | Predicted endonuclease containing a URI domain | conserved hypothetical protein |
| AE002098_45079 | AAF40518.1 | 19328 | COG2827 | Predicted endonuclease containing a URI domain | conserved hypothetical protein |
| Excluded Genes in neisseriameningitidismc58 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE002098_781444 | AAF41164.1 | 32603 | COG0582 | Integrase | integrase/recombinase XerD |
| AE002098_1973036 | AAF42202.1 | 32603 | COG0582 | Integrase | integrase/recombinase XerC |
| AE002098_1067576 | AAF41448.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_831324 | AAF41218.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_857820 | AAF41245.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_669309 | AAF41058.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_233555 | AAF40681.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_925446 | AAF41319.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_1037508 | AAF41422.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_1115831 | AAF41490.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_1789425 | AAF42060.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_456464 | AAF40880.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_1267613 | AAF41637.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_1257795 | AAF41631.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_1854101 | AAF42110.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_2258771 | AAF42456.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase, IS30 family |
| AE002098_1697117 | AAF41984.1 | 25665 | COG2946 | Putative phage replication protein RstA | conserved hypothetical protein |
| AE002098_1600900 | AAF41898.1 | 25665 | COG2946 | Putative phage replication protein RstA | conserved hypothetical protein |
| AE002098_1004334 | AAF41394.1 | 31311 | COG3039 | Transposase and inactivated derivatives, IS5 family | IS1106 transposase |
| AE002098_929999 | AAF41327.1 | 31311 | COG3039 | Transposase and inactivated derivatives, IS5 family | IS1106 transposase, putative |
| AE002098_1428201 | AAF41763.1 | 31311 | COG3039 | Transposase and inactivated derivatives, IS5 family | IS1106 transposase |
| AE002098_1591942 | AAF41894.1 | 31311 | COG3039 | Transposase and inactivated derivatives, IS5 family | IS1106 transposase |
| AE002098_1661104 | AAF41954.1 | 31311 | COG3039 | Transposase and inactivated derivatives, IS5 family | IS1106 transposase |
| AE002098_1831577 | AAF42093.1 | 23431 | COG3547 | Transposase and inactivated derivatives | pilin gene inverting protein PivNM-2 |
| AE002098_1608048 | AAF41907.1 | 23431 | COG3547 | Transposase and inactivated derivatives | pilin gene inverting protein PivNM-1A |
| AE002098_1690724 | AAF41976.1 | 23431 | COG3547 | Transposase and inactivated derivatives | pilin gene inverting protein PivNM-1B |
