| All COGs for mesorhizobiumloti_maff303099 : L |
| Genes (#) | COG | COG description |
| 2 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
| 2 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
| 2 | COG0210 | Superfamily I DNA and RNA helicases |
| 2 | COG0350 | Methylated DNA-protein cysteine methyltransferase |
| 2 | COG0389 | Nucleotidyltransferase/DNA polymerase involved in DNA repair |
| 4 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes |
| 2 | COG0507 | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
| 3 | COG0513 | Superfamily II DNA and RNA helicases |
| 2 | COG0587 | DNA polymerase III, alpha subunit |
| 3 | COG0708 | Exonuclease III |
| 3 | COG0776 | Bacterial nucleoid DNA-binding protein |
| 2 | COG1525 | Micrococcal nuclease (thermonuclease) homologs |
| 5 | COG1793 | ATP-dependent DNA ligase |
| 2 | COG2827 | Predicted endonuclease containing a URI domain |
| 1 | COG3285 | Predicted eukaryotic-type DNA primase |
| Included Genes in mesorhizobiumloti_maff303099 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| BA000012_4120221 | BAB51680.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | DNA gyrase subunit B |
| BA000012_724438 | BAB48389.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | DNA topoisomerase |
| BA000012_6871339 | BAB53934.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | DNA topoisomerase IV subunit A |
| BA000012_575010 | BAB48264.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | DNA gyrase subunit A |
| BA000012_6556921 | BAB53611.1 | 18279 | COG0210 | Superfamily I DNA and RNA helicases | ATP-dependent DNA helicase |
| BA000012_1246398 | BAB48861.1 | 18279 | COG0210 | Superfamily I DNA and RNA helicases | DNA helicase II |
| BA000012_2051211 | BAB49637.1 | 31928 | COG0350 | Methylated DNA-protein cysteine methyltransferase | methylated-DNA-protein-cystein methyltransferase |
| BA000012_1534955 | BAB49130.1 | 31928 | COG0350 | Methylated DNA-protein cysteine methyltransferase | O6-methylguanine-DNA methyltransferase |
| BA000012_1543533 | BAB49140.1 | 19914 | COG0389 | Nucleotidyltransferase/DNA polymerase involved in DNA repair | DNA damage inducible protein P |
| BA000012_691609 | BAB48362.1 | 19914 | COG0389 | Nucleotidyltransferase/DNA polymerase involved in DNA repair | DNA damage inducible protein P |
| BA000012_2788135 | BAB50342.1 | 12241 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | mutator protein; MutT |
| BA000012_3196953 | BAB50763.1 | 12241 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | invasion-associated protein A |
| BA000012_2540157 | BAB50120.1 | 23986 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | |
| BA000012_98725 | BAB47787.1 | 23986 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | |
| BA000012_4610315 | BAB52121.1 | 11384 | COG0507 | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member | conjugal transfer protein; TraA |
| BA000012_785649 | BAB48437.1 | 11384 | COG0507 | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member | probable conjugal transfer protein; TraA |
| BA000012_245975 | BAB47949.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| BA000012_3486002 | BAB51058.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | DEAD-BOX protein, ATP-independent RNA helicase |
| BA000012_156279 | BAB47854.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | probable ATP-dependent RNA helicase |
| BA000012_3508368 | BAB51086.1 | 10112 | COG0587 | DNA polymerase III, alpha subunit | DNA polymerase III alpha chain |
| BA000012_695575 | BAB48366.1 | 10112 | COG0587 | DNA polymerase III, alpha subunit | DNA polymerase III alpha subunit |
| BA000012_918211 | BAB48547.1 | 33302 | COG0708 | Exonuclease III | exodeoxyribonuclease III |
| BA000012_3382149 | BAB50944.1 | 33302 | COG0708 | Exonuclease III | exodeoxyribonuclease III |
| BA000012_1693030 | BAB49292.1 | 33302 | COG0708 | Exonuclease III | probable exonuclease |
| BA000012_6963703 | BAB54353.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | DNA-binding protein; HRm |
| BA000012_6920509 | BAB54309.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | integration host factor alpha subunit |
| BA000012_2562507 | BAB50146.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | integration host factor beta chain |
| BA000012_6680026 | BAB53752.1 | 24488 | COG1525 | Micrococcal nuclease (thermonuclease) homologs | succinoglycan biosynthesis protein; ExoI |
| BA000012_411026 | BAB48123.1 | 24488 | COG1525 | Micrococcal nuclease (thermonuclease) homologs | succinoglycan biotynthesis protein; ExoI |
| BA000012_6622557 | BAB53688.1 | 6337 | COG1793 | ATP-dependent DNA ligase | |
| BA000012_5492926 | BAB52940.1 | 6337 | COG1793 | ATP-dependent DNA ligase | |
| BA000012_6671300 | BAB53743.1 | 6337 | COG1793 | ATP-dependent DNA ligase | |
| BA000012_3734187 | BAB51298.1 | 6337 | COG1793 | ATP-dependent DNA ligase | |
| BA000012_1697517 | BAB49297.1 | 9632 | COG1793 | ATP-dependent DNA ligase | probable ATP-dependent DNA ligase |
| BA000012_3504934 | BAB51082.1 | 19328 | COG2827 | Predicted endonuclease containing a URI domain | |
| BA000012_1697115 | BAB49296.1 | 19328 | COG2827 | Predicted endonuclease containing a URI domain | |
| BA000012_3654504 | BAB51222.1 | 9632 | COG3285 | Predicted eukaryotic-type DNA primase | ATP-dependent DNA ligase |
| Excluded Genes in mesorhizobiumloti_maff303099 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| BA000012_4884578 | BAB52394.1 | 13478 | COG0582 | Integrase | integrase/recombinase |
| BA000012_5048728 | BAB52556.1 | 13478 | COG0582 | Integrase | integrase/recombinase |
| BA000012_4815968 | BAB52316.1 | 13807 | COG0582 | Integrase | integrase/recombinase |
| BA000012_4881338 | BAB52392.1 | 13807 | COG0582 | Integrase | integrase/recombinase |
| BA000012_5254244 | BAB52731.1 | 26664 | COG0582 | Integrase | symbiosis island integrase |
| BA000012_4374552 | BAB51908.1 | 26664 | COG0582 | Integrase | CP4-like integrase |
| BA000012_4643427 | BAB52151.1 | 26664 | COG0582 | Integrase | symbiosis island integrase |
| BA000012_5714223 | BAB53138.1 | 26664 | COG0582 | Integrase | CP4-like integrase |
| BA000012_358249 | BAB48065.1 | 26664 | COG0582 | Integrase | probable prophage integrase |
| BA000012_3230719 | BAB50796.1 | 26664 | COG0582 | Integrase | phage integrase |
| BA000012_5252978 | BAB52730.1 | 32603 | COG0582 | Integrase | integrase/recombinase |
| BA000012_4814973 | BAB52315.1 | 32603 | COG0582 | Integrase | integrase/recombinase |
| BA000012_4880343 | BAB52391.1 | 32603 | COG0582 | Integrase | integrase/recombinase |
| BA000012_4878997 | BAB52388.1 | 32603 | COG0582 | Integrase | integrase/recombinase |
| BA000012_5046733 | BAB52554.1 | 32603 | COG0582 | Integrase | integrase/recombinase |
| BA000012_5202040 | BAB52683.1 | 32603 | COG0582 | Integrase | integrase/recombinase |
| BA000012_3415632 | BAB50981.1 | 32603 | COG0582 | Integrase | site-specific recombinase, integrase/recombinase RipX; XerC |
| BA000012_4816903 | BAB52317.1 | 6848 | COG0582 | Integrase | integrase/recombinase |
| BA000012_4882273 | BAB52393.1 | 6848 | COG0582 | Integrase | integrase/recombinase |
| BA000012_4885790 | BAB52395.1 | 33411 | COG1484 | DNA replication protein | transposase |
| BA000012_4878385 | BAB52387.1 | 33411 | COG1484 | DNA replication protein | transposase |
| BA000012_5041217 | BAB52549.1 | 33411 | COG1484 | DNA replication protein | transposase |
| BA000012_5049999 | BAB52558.1 | 33411 | COG1484 | DNA replication protein | transposase |
| BA000012_6384009 | BAB54112.1 | 14026 | COG1573 | Uracil-DNA glycosylase | |
| BA000012_4083479 | BAB51645.1 | 14026 | COG1573 | Uracil-DNA glycosylase | |
| BA000012_5622700 | BAB53052.1 | 8081 | COG1943 | Transposase and inactivated derivatives | |
| BA000012_5621295 | BAB53051.1 | 8081 | COG1943 | Transposase and inactivated derivatives | |
| BA000012_5619046 | BAB53048.1 | 8081 | COG1943 | Transposase and inactivated derivatives | |
| BA000012_5619880 | BAB53049.1 | 8081 | COG1943 | Transposase and inactivated derivatives | |
| BA000012_4888299 | BAB52398.1 | 17474 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs | transposase |
| BA000012_5038631 | BAB52548.1 | 17474 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs | transposase |
| BA000012_3223034 | BAB50788.1 | 33680 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs | DNA invertase gene; RlgA |
| BA000012_5136561 | BAB52638.1 | 33680 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs | putative DNA invertase |
| BA000012_4834291 | BAB52333.1 | 33272 | COG2801 | Transposase and inactivated derivatives | integrase/recombinase |
| BA000012_4975380 | BAB52488.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase |
| BA000012_4811913 | BAB52312.1 | 5535 | COG2801 | Transposase and inactivated derivatives | transposase |
| BA000012_4927109 | BAB52433.1 | 5535 | COG2801 | Transposase and inactivated derivatives | transposase |
| BA000012_4927945 | BAB52434.1 | 7800 | COG2801 | Transposase and inactivated derivatives | transposase |
| BA000012_4655085 | BAB52161.1 | 7800 | COG2801 | Transposase and inactivated derivatives | transposase |
| BA000012_4810157 | BAB52307.1 | 7800 | COG2801 | Transposase and inactivated derivatives | transposase |
| BA000012_3213147 | BAB50779.1 | 7800 | COG2801 | Transposase and inactivated derivatives | insertion element ISR1 hypothetical 10 kD protein A3 |
| BA000012_4833998 | BAB52332.1 | 33231 | COG2963 | Transposase and inactivated derivatives | transposase |
| BA000012_4975087 | BAB52487.1 | 33231 | COG2963 | Transposase and inactivated derivatives | transposase |
| BA000012_5037536 | BAB52546.1 | 4698 | COG3039 | Transposase and inactivated derivatives, IS5 family | transposase |
| BA000012_5043528 | BAB52551.1 | 4698 | COG3039 | Transposase and inactivated derivatives, IS5 family | transposase |
| BA000012_4810684 | BAB52309.1 | 33454 | COG3293 | Transposase and inactivated derivatives | transposase |
| BA000012_4876417 | BAB52384.1 | 33454 | COG3293 | Transposase and inactivated derivatives | transposase |
| BA000012_4873243 | BAB52381.1 | 33454 | COG3293 | Transposase and inactivated derivatives | transposase |
| BA000012_4872758 | BAB52380.1 | 33454 | COG3293 | Transposase and inactivated derivatives | transposase |
| BA000012_5499951 | BAB52948.1 | 33454 | COG3293 | Transposase and inactivated derivatives | transposase |
| BA000012_5499466 | BAB52947.1 | 33454 | COG3293 | Transposase and inactivated derivatives | transposase |
| BA000012_5721572 | BAB53147.1 | 33454 | COG3293 | Transposase and inactivated derivatives | transposase |
| BA000012_5721087 | BAB53146.1 | 33454 | COG3293 | Transposase and inactivated derivatives | transposase |
| BA000012_6748677 | BAB53825.1 | 33454 | COG3293 | Transposase and inactivated derivatives | |
| BA000012_4811088 | BAB52310.1 | 33454 | COG3293 | Transposase and inactivated derivatives | transposase |
| BA000012_6667698 | BAB53737.1 | 33454 | COG3293 | Transposase and inactivated derivatives | |
| BA000012_1610630 | BAB49203.1 | 33454 | COG3293 | Transposase and inactivated derivatives | |
| BA000012_1610143 | BAB49202.1 | 33454 | COG3293 | Transposase and inactivated derivatives | |
| BA000012_2052824 | BAB49640.1 | 33454 | COG3293 | Transposase and inactivated derivatives | |
| BA000012_5185929 | BAB52672.1 | 19481 | COG3316 | Transposase and inactivated derivatives | transposase |
| BA000012_5175630 | BAB52670.1 | 19481 | COG3316 | Transposase and inactivated derivatives | transposase |
| BA000012_5169378 | BAB52664.1 | 19481 | COG3316 | Transposase and inactivated derivatives | transposase |
| BA000012_4824282 | BAB52322.1 | 14660 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4891501 | BAB52401.1 | 14660 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4850162 | BAB52352.1 | 14660 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4835653 | BAB52336.1 | 14660 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4906125 | BAB52416.1 | 15298 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4873599 | BAB52382.1 | 15298 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4839301 | BAB52340.1 | 15298 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_5009628 | BAB52522.1 | 15298 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4827399 | BAB52325.1 | 31135 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4903889 | BAB52413.1 | 31135 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4825642 | BAB52323.1 | 33000 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4770742 | BAB52274.1 | 33000 | COG3547 | Transposase and inactivated derivatives | |
| BA000012_4904890 | BAB52414.1 | 33000 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4901880 | BAB52411.1 | 33000 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4853525 | BAB52358.1 | 33000 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4840559 | BAB52342.1 | 33000 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4905081 | BAB52415.1 | 33000 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_4945710 | BAB52455.1 | 33000 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_791850 | BAB48441.1 | 33000 | COG3547 | Transposase and inactivated derivatives | probable transposase |
| BA000012_4303839 | BAB51846.1 | 4172 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_1428641 | BAB49020.1 | 4172 | COG3547 | Transposase and inactivated derivatives | probable transposase |
| BA000012_3311004 | BAB50868.1 | 4172 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_3309743 | BAB50867.1 | 4172 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_3407901 | BAB50970.1 | 4172 | COG3547 | Transposase and inactivated derivatives | transposase |
| BA000012_1086194 | BAB48696.1 | 4172 | COG3547 | Transposase and inactivated derivatives | probable transposase |
| BA000012_4890446 | BAB52399.1 | 31733 | COG4584 | Transposase and inactivated derivatives | transposase |
| BA000012_4886309 | BAB52396.1 | 31733 | COG4584 | Transposase and inactivated derivatives | transposase |
| BA000012_2880338 | BAB50438.1 | 32603 | COG4974 | Site-specific recombinase XerD | site-specific recombinase |
