| All COGs for listeriainnocua_clip11262 : L |
| Genes (#) | COG | COG description |
| 2 | COG0178 | Excinuclease ATPase subunit |
| 2 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
| 2 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
| 2 | COG0322 | Nuclease subunit of the excinuclease complex |
| 2 | COG0350 | Methylated DNA-protein cysteine methyltransferase |
| 2 | COG0389 | Nucleotidyltransferase/DNA polymerase involved in DNA repair |
| 4 | COG0513 | Superfamily II DNA and RNA helicases |
| 2 | COG0514 | Superfamily II DNA helicase |
| 2 | COG0692 | Uracil DNA glycosylase |
| 2 | COG1484 | DNA replication protein |
| Included Genes in listeriainnocua_clip11262 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AL592022_2647067 | CAC97858.1 | 5240 | COG0178 | Excinuclease ATPase subunit | excinuclease ABC (subunit A) |
| AL592022_2180700 | CAC97386.1 | 5240 | COG0178 | Excinuclease ATPase subunit | |
| AL592022_1317906 | CAC96556.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | |
| AL592022_6031 | CAC95239.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | DNA gyrase subunit B |
| AL592022_1319870 | CAC96557.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | |
| AL592022_8066 | CAC95240.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | DNA gyrase subunit A |
| AL592022_1210805 | CAC96428.1 | 31598 | COG0322 | Nuclease subunit of the excinuclease complex | |
| AL592022_873139 | CAC96071.1 | 31598 | COG0322 | Nuclease subunit of the excinuclease complex | |
| AL592022_1017980 | CAC96226.1 | 31928 | COG0350 | Methylated DNA-protein cysteine methyltransferase | |
| AL592022_2379374 | CAC97571.1 | 31928 | COG0350 | Methylated DNA-protein cysteine methyltransferase | |
| AL592022_2837366 | CAC98049.1 | 19914 | COG0389 | Nucleotidyltransferase/DNA polymerase involved in DNA repair | |
| AL592022_2096496 | CAC97312.1 | 19914 | COG0389 | Nucleotidyltransferase/DNA polymerase involved in DNA repair | |
| AL592022_1229882 | CAC96445.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | |
| AL592022_1838943 | CAC97064.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | |
| AL592022_894912 | CAC96091.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | |
| AL592022_1489127 | CAC96719.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | |
| AL592022_2917032 | CAC98125.1 | 2991 | COG0514 | Superfamily II DNA helicase | |
| AL592022_2071244 | CAC97286.1 | 2991 | COG0514 | Superfamily II DNA helicase | |
| AL592022_420093 | CAC95641.1 | 2823 | COG0692 | Uracil DNA glycosylase | |
| AL592022_1203555 | CAC96421.1 | 2823 | COG0692 | Uracil DNA glycosylase | |
| AL592022_1751623 | CAC96983.1 | 26099 | COG1484 | DNA replication protein | |
| AL592022_1256321 | CAC96476.1 | 26099 | COG1484 | DNA replication protein | |
| Excluded Genes in listeriainnocua_clip11262 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AL592022_1261428 | CAC96485.1 | 21620 | COG0582 | Integrase | |
| AL592022_2433733 | CAC97636.1 | 21620 | COG0582 | Integrase | |
| AL592022_548512 | CAC95756.1 | 21620 | COG0582 | Integrase | |
| AL592022_1746435 | CAC96974.1 | 21620 | COG0582 | Integrase | |
| AL592022_2619376 | CAC97828.1 | 21620 | COG0582 | Integrase | |
| AL592022_2686080 | CAC97893.1 | 33594 | COG0629 | Single-stranded DNA-binding protein | |
| AL592022_2431065 | CAC97629.1 | 33594 | COG0629 | Single-stranded DNA-binding protein | |
| AL592022_42038 | CAC95271.1 | 33594 | COG0629 | Single-stranded DNA-binding protein | |
| AL592022_90333 | CAC95330.1 | 33594 | COG0629 | Single-stranded DNA-binding protein | |
| AL592022_694103 | CAC95896.1 | 33231 | COG2963 | Transposase and inactivated derivatives | |
| AL592022_859530 | CAC96059.1 | 33231 | COG2963 | Transposase and inactivated derivatives | |
| AL592022_2436646 | CAC97640.1 | 7225 | COG3723 | Recombinational DNA repair protein (RecE pathway) | |
| AL592022_84085 | CAC95318.1 | 7225 | COG3723 | Recombinational DNA repair protein (RecE pathway) | putative recombinase [Bacteriophage A118] |
| AL592022_84921 | CAC95319.1 | 7599 | COG3935 | Putative primosome component and related proteins | |
| AL592022_2435694 | CAC97639.1 | 7599 | COG3935 | Putative primosome component and related proteins | |
| AL592022_1750604 | CAC96980.1 | 16212 | COG4570 | Holliday junction resolvase | |
| AL592022_1257766 | CAC96479.1 | 16212 | COG4570 | Holliday junction resolvase | |
| AL592022_2084084 | CAC97299.1 | 32603 | COG4974 | Site-specific recombinase XerD | |
| AL592022_1311106 | CAC96547.1 | 32603 | COG4974 | Site-specific recombinase XerD | |
| AL592022_2437461 | CAC97641.1 | 5518 | COG5377 | Phage-related protein, predicted endonuclease | gp47 [Bacteriophage A118] |
| AL592022_83126 | CAC95317.1 | 5518 | COG5377 | Phage-related protein, predicted endonuclease | |
