| All COGs for lactococcuslactissubsp_il1403 : L |
| Genes (#) | COG | COG description |
| 2 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
| 2 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
| 2 | COG0389 | Nucleotidyltransferase/DNA polymerase involved in DNA repair |
| 3 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes |
| 2 | COG0513 | Superfamily II DNA and RNA helicases |
| 2 | COG0776 | Bacterial nucleoid DNA-binding protein |
| Included Genes in lactococcuslactissubsp_il1403 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE005176_927935 | AAK05003.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | DNA gyrase subunit B (EC 5.99.1.3) |
| AE005176_1006671 | AAK05077.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | topoisomerase IV subunit B (EC 5.99.1.-) |
| AE005176_1010895 | AAK05082.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | topoisomerase IV subunit B (EC 5.99.1.-) |
| AE005176_1121779 | AAK05209.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | DNA gyrase subunit A (EC 5.99.1.3) |
| AE005176_2104597 | AAK06127.1 | 19914 | COG0389 | Nucleotidyltransferase/DNA polymerase involved in DNA repair | DNA-damage-inducible protein P |
| AE005176_580086 | AAK04686.1 | 19914 | COG0389 | Nucleotidyltransferase/DNA polymerase involved in DNA repair | SOS responce UmuC protein |
| AE005176_1094156 | AAK05183.1 | 12241 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | conserved hypothetical protein |
| AE005176_1665985 | AAK05719.1 | 12241 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | conserved hypothetical protein |
| AE005176_555661 | AAK04659.1 | 12241 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase |
| AE005176_353033 | AAK04448.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| AE005176_415804 | AAK04508.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| AE005176_902908 | AAK04978.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | HU-like DNA-binding protein |
| AE005176_502338 | AAK04600.1 | 34486 | COG0776 | Bacterial nucleoid DNA-binding protein | HU like DNA-binding protein |
| Excluded Genes in lactococcuslactissubsp_il1403 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE005176_48543 | AAK04145.1 | 21620 | COG0582 | Integrase | prophage ps1 protein 23, integrase |
| AE005176_2024436 | AAK06046.1 | 21620 | COG0582 | Integrase | prophage ps3 protein 16, integrase |
| AE005176_1036642 | AAK05106.1 | 21620 | COG0582 | Integrase | prophage pi2 protein 01, integrase |
| AE005176_447236 | AAK04534.1 | 21620 | COG0582 | Integrase | prophage pi1 protein 01, integrase |
| AE005176_1455870 | AAK05531.1 | 21620 | COG0582 | Integrase | prophage pi3 protein 60, integrase |
| AE005176_1043169 | AAK05117.1 | 33594 | COG0629 | Single-stranded DNA-binding protein | prophage pi2 protein 12, single strand binding protein |
| AE005176_1449659 | AAK05519.1 | 33594 | COG0629 | Single-stranded DNA-binding protein | prophage pi3 protein 48, single strand binding helix destabilising protein |
| AE005176_398016 | AAK04490.1 | 33594 | COG0629 | Single-stranded DNA-binding protein | single-strand binding protein |
| AE005176_2274181 | AAK06288.1 | 33594 | COG0629 | Single-stranded DNA-binding protein | single-strand binding protein |
| AE005176_455615 | AAK04547.1 | 7547 | COG1484 | DNA replication protein | prophage pi1 protein 14, DNA replication protein |
| AE005176_1447798 | AAK05517.1 | 7547 | COG1484 | DNA replication protein | prophage pi3 protein 46, DNA replication protein |
| AE005176_2216165 | AAK06245.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS1077G |
| AE005176_2214945 | AAK06243.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS904I |
| AE005176_2102725 | AAK06124.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS981J |
| AE005176_626561 | AAK04735.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS904E |
| AE005176_91052 | AAK04185.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS981A |
| AE005176_53900 | AAK04151.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS904A |
| AE005176_53161 | AAK04150.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS1077A |
| AE005176_140045 | AAK04238.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS904C |
| AE005176_139171 | AAK04237.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS1077B |
| AE005176_137799 | AAK04235.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS904B |
| AE005176_374892 | AAK04470.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS1077C |
| AE005176_373520 | AAK04468.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS904D |
| AE005176_838947 | AAK04925.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS904G |
| AE005176_837114 | AAK04922.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS1077E |
| AE005176_835893 | AAK04920.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS904F |
| AE005176_1585849 | AAK05642.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS981H |
| AE005176_2154611 | AAK06171.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS904H |
| AE005176_1747150 | AAK05789.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS981I |
| AE005176_2155831 | AAK06173.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS1077F |
| AE005176_627782 | AAK04737.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS1077D |
| AE005176_650157 | AAK04755.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS981C |
| AE005176_728130 | AAK04820.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS981D |
| AE005176_1216209 | AAK05293.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS981E |
| AE005176_1275416 | AAK05346.1 | 33272 | COG2801 | Transposase and inactivated derivatives | transposase of IS981G |
| AE005176_2267576 | AAK06281.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983O |
| AE005176_1754225 | AAK05796.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983G |
| AE005176_2016951 | AAK06035.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983K |
| AE005176_1977927 | AAK06006.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983I |
| AE005176_1953555 | AAK05983.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983H |
| AE005176_681575 | AAK04779.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983A |
| AE005176_957642 | AAK05030.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983C |
| AE005176_1555588 | AAK05613.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983F |
| AE005176_2011426 | AAK06029.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983J |
| AE005176_2083063 | AAK06102.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983L |
| AE005176_2147273 | AAK06160.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983M |
| AE005176_2202924 | AAK06233.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983N |
| AE005176_706695 | AAK04801.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983B |
| AE005176_1337988 | AAK05401.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983D |
| AE005176_1395697 | AAK05457.1 | 33322 | COG2826 | Transposase and inactivated derivatives, IS30 family | transposase of IS983E |
| AE005176_2215802 | AAK06244.1 | 33231 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_2155468 | AAK06172.1 | 33231 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_54757 | AAK04152.1 | 33231 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_137413 | AAK04234.1 | 33231 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_373134 | AAK04467.1 | 33231 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_838561 | AAK04924.1 | 33231 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_140902 | AAK04239.1 | 33231 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_836750 | AAK04921.1 | 33231 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_627418 | AAK04736.1 | 33231 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_651008 | AAK04756.1 | 5953 | COG2963 | Transposase and inactivated derivatives | transposase |
| AE005176_1748001 | AAK05790.1 | 5953 | COG2963 | Transposase and inactivated derivatives | transposase |
| AE005176_2103576 | AAK06125.1 | 5953 | COG2963 | Transposase and inactivated derivatives | transposase |
| AE005176_1276267 | AAK05347.1 | 5953 | COG2963 | Transposase and inactivated derivatives | transposase |
| AE005176_1221637 | AAK05300.1 | 5953 | COG2963 | Transposase and inactivated derivatives | transposase |
| AE005176_728981 | AAK04821.1 | 5953 | COG2963 | Transposase and inactivated derivatives | transposase |
| AE005176_93882 | AAK04188.1 | 5953 | COG2963 | Transposase and inactivated derivatives | transposase |
| AE005176_91903 | AAK04186.1 | 5953 | COG2963 | Transposase and inactivated derivatives | transposase |
| AE005176_1217060 | AAK05294.1 | 5953 | COG2963 | Transposase and inactivated derivatives | transposase |
| AE005176_1586700 | AAK05643.1 | 5953 | COG2963 | Transposase and inactivated derivatives | transposase |
| AE005176_2216980 | AAK06246.1 | 7751 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_2156646 | AAK06174.1 | 7751 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_628597 | AAK04738.1 | 7751 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_138617 | AAK04236.1 | 7751 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_837929 | AAK04923.1 | 7751 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_52656 | AAK04149.1 | 7751 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
| AE005176_374338 | AAK04469.1 | 7751 | COG2963 | Transposase and inactivated derivatives | HYPOTHETICAL PROTEIN |
