| All COGs for clostridiumacetobutylicum_atcc824 : L |
| Genes (#) | COG | COG description |
| 2 | COG0084 | Mg-dependent DNase |
| 2 | COG0178 | Excinuclease ATPase subunit |
| 2 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
| 2 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
| 2 | COG0210 | Superfamily I DNA and RNA helicases |
| 2 | COG0272 | NAD-dependent DNA ligase (contains BRCT domain type II) |
| 2 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes |
| 2 | COG0507 | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
| 3 | COG0513 | Superfamily II DNA and RNA helicases |
| 1 | COG0550 | Topoisomerase IA |
| 1 | COG0551 | Zn-finger domain associated with topoisomerase type I |
| 3 | COG0553 | Superfamily II DNA/RNA helicases, SNF2 family |
| 2 | COG0587 | DNA polymerase III, alpha subunit |
| 5 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs |
| 2 | COG2256 | ATPase related to the helicase subunit of the Holliday junction resolvase |
| Included Genes in clostridiumacetobutylicum_atcc824 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE001437_3126129 | AAK80930.1 | 3753 | COG0084 | Mg-dependent DNase | PHP superfamily hydrolase, YABD ortholog |
| AE001437_1541930 | AAK79365.1 | 3753 | COG0084 | Mg-dependent DNase | Predicted hydrolase of PHP superfamily |
| AE001437_1613639 | AAK79432.1 | 5240 | COG0178 | Excinuclease ATPase subunit | UVRA-like protein, probably involved in MDR transport |
| AE001437_577260 | AAK78483.1 | 5240 | COG0178 | Excinuclease ATPase subunit | Excinuclease ABC subunit A (ATP-ase), (uvrA) |
| AE001437_1766134 | AAK79594.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | DNA gyrase B subunit |
| AE001437_4844 | AAK77993.1 | 4233 | COG0187 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | DNA gyrase (topoisomerase II) B subunit |
| AE001437_1768107 | AAK79595.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | DNA gyrase A subunit |
| AE001437_6783 | AAK77994.1 | 1817 | COG0188 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | DNA gyrase (topoisomerase II) A subunit |
| AE001437_2791594 | AAK80621.1 | 18279 | COG0210 | Superfamily I DNA and RNA helicases | ATP-dependent superfamily I DNA helicase, PCRA |
| AE001437_1150264 | AAK78979.1 | 18279 | COG0210 | Superfamily I DNA and RNA helicases | Superfamily I DNA helicase (rep-like helicase) |
| AE001437_2789552 | AAK80620.1 | 1532 | COG0272 | NAD-dependent DNA ligase (contains BRCT domain type II) | NAD-dependent DNA ligase |
| AE001437_1343492 | AAK79167.1 | 1532 | COG0272 | NAD-dependent DNA ligase (contains BRCT domain type II) | DNA ligase (NAD dependent), LigA |
| AE001437_2006251 | AAK79818.1 | 32357 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | Nudix (MutT) family hydrolase |
| AE001437_3802864 | AAK81524.1 | 32357 | COG0494 | NTP pyrophosphohydrolases including oxidative damage repair enzymes | Nudix (MutT) family hydrolase |
| AE001437_2987112 | AAK80797.1 | 9105 | COG0507 | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member | ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD |
| AE001437_1309267 | AAK79116.1 | 9105 | COG0507 | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member | Exodeoxyribonuclease V, Alpha subunit, RecD |
| AE001437_3149865 | AAK80951.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis ortholog |
| AE001437_2877184 | AAK80694.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP dependent RNA helicase DeaD, superfamily II |
| AE001437_906689 | AAK78760.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase, superfamily II |
| AE001437_3766674 | AAK81490.1 | 33765 | COG0550 | Topoisomerase IA | Topoisomerase B |
| AE001437_3079332 | AAK80889.1 | 33765 | COG0551 | Zn-finger domain associated with topoisomerase type I | Topoisomerase B |
| AE001437_3133673 | AAK80937.1 | 5606 | COG0553 | Superfamily II DNA/RNA helicases, SNF2 family | Superfamily II DNA/RNA helicase, SNF2 family |
| AE001437_3469203 | AAK81236.1 | 5606 | COG0553 | Superfamily II DNA/RNA helicases, SNF2 family | Superfamily II DNA/RNA helicases, SNF2 family |
| AE001437_3631171 | AAK81371.1 | 5606 | COG0553 | Superfamily II DNA/RNA helicases, SNF2 family | DNA/RNA helicase, SNF2 |
| AE001437_592466 | AAK78496.1 | 10112 | COG0587 | DNA polymerase III, alpha subunit | DNA polimerase III, alpha chain (dnaE) |
| AE001437_1364934 | AAK79195.1 | 10112 | COG0587 | DNA polymerase III, alpha subunit | DNA Polymerase III Alpha chain (dnaE) |
| AE001437_2068045 | AAK79913.1 | 10396 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs | Site-specific recombinases, DNA invertase Pin homolog |
| AE001437_2014259 | AAK79829.1 | 10396 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs | Site-specific recombinases, DNA invertase Pin homolog |
| AE001437_2072361 | AAK79918.1 | 10396 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs | Site-specific recombinases, DNA invertase Pin homolog |
| AE001437_2341792 | AAK80204.1 | 28343 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs | Site-specific recombinase, DNA invertase Pin homolog |
| AE001437_1370501 | AAK79200.1 | 28343 | COG1961 | Site-specific recombinases, DNA invertase Pin homologs | Site-specific DNA recombinase |
| AE001437_383330 | AAK78307.1 | 3669 | COG2256 | ATPase related to the helicase subunit of the Holliday junction resolvase | ATPase related to the helicase subunit of Holliday junction resolvase |
| AE001437_1814785 | AAK79637.1 | 3669 | COG2256 | ATPase related to the helicase subunit of the Holliday junction resolvase | Predicted ATPase related to the helicase subunit of the Holliday junction resolvase |
| Excluded Genes in clostridiumacetobutylicum_atcc824 : L |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE001437_1327295 | AAK79142.1 | 32603 | COG0582 | Integrase | Integrase/recombinase (xerD/xerC family) |
| AE001437_3928639 | AAK81643.1 | 33594 | COG0629 | Single-stranded DNA-binding protein | Single strand DNA binding protein, SSB |
| AE001437_1085192 | AAK78921.1 | 33594 | COG0629 | Single-stranded DNA-binding protein | Single-stranded DNA-binding protein |
| AE001437_2053592 | AAK79882.1 | 33594 | COG0629 | Single-stranded DNA-binding protein | Phage related SSB-like protein |
| AE001437_3136846 | AAK80938.1 | 14026 | COG1573 | Uracil-DNA glycosylase | Uracil-DNA glycosylase |
| AE001437_243640 | AAK78200.1 | 14026 | COG1573 | Uracil-DNA glycosylase | Uracyl DNA glycosilase |
| AE001437_1639076 | AAK79461.1 | 28157 | COG3677 | Transposase and inactivated derivatives | Zn-finger DNA-binding domain |
| AE001437_1741899 | AAK79564.1 | 28157 | COG3677 | Transposase and inactivated derivatives | Zn-finger DNA-binding domain |
| AE001437_2170033 | AAK80025.1 | 32603 | COG4974 | Site-specific recombinase XerD | Integrase/recombinase XerD family |
