| All COGs for xylellafastidiosa9a5c : K |
| Genes (#) | COG | COG description |
| 1 | COG0085 | DNA-directed RNA polymerase, beta subunit/140 kD subunit |
| 1 | COG0086 | DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
| 2 | COG0317 | Guanosine polyphosphate pyrophosphohydrolases/synthetases |
| 3 | COG0513 | Superfamily II DNA and RNA helicases |
| 2 | COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
| 6 | COG0583 | Transcriptional regulator |
| 5 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
| 2 | COG1278 | Cold shock proteins |
| 2 | COG1846 | Transcriptional regulators |
| 2 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
| 2 | COG2944 | Predicted transcriptional regulator |
| 3 | COG3636 | Predicted transcriptional regulator |
| Included Genes in xylellafastidiosa9a5c : K |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE003849_2515906 | AAF85430.1 | 9296 | COG0085 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | RNA polymerase beta subunit |
| AE003849_2511584 | AAF85429.1 | 9296 | COG0086 | DNA-directed RNA polymerase, beta' subunit/160 kD subunit | RNA polymerase beta' subunit |
| AE003849_1266639 | AAF84125.1 | 32745 | COG0317 | Guanosine polyphosphate pyrophosphohydrolases/synthetases | ATP:GTP 3'-pyrophosphotranferase |
| AE003849_357824 | AAF83162.1 | 32745 | COG0317 | Guanosine polyphosphate pyrophosphohydrolases/synthetases | pentaphosphate guanosine-3'-pyrophosphohydrolase |
| AE003849_262848 | AAF83065.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| AE003849_201673 | AAF83005.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| AE003849_2574884 | AAF85493.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| AE003849_2570566 | AAF85488.1 | 4991 | COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | RNA polymerase sigma-32 factor |
| AE003849_1296789 | AAF84159.1 | 4991 | COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | RNA polymerase sigma-70 factor |
| AE003849_1670660 | AAF84561.1 | 33815 | COG0583 | Transcriptional regulator | transcriptional regulator (LysR family) |
| AE003849_1685230 | AAF84577.1 | 33815 | COG0583 | Transcriptional regulator | transcriptional regulator (LysR family) |
| AE003849_1650033 | AAF84539.1 | 33815 | COG0583 | Transcriptional regulator | transcriptional regulator (LysR family) |
| AE003849_1642422 | AAF84531.1 | 33815 | COG0583 | Transcriptional regulator | hypothetical protein |
| AE003849_1092886 | AAF83942.1 | 33815 | COG0583 | Transcriptional regulator | transcriptional regulator (LysR family) |
| AE003849_1490224 | AAF84341.1 | 33815 | COG0583 | Transcriptional regulator | oxidative stress transcriptional regulator |
| AE003849_338428 | AAF83133.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component system, regulatory protein |
| AE003849_400823 | AAF83199.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component system, regulatory protein |
| AE003849_2215260 | AAF85135.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component system, regulatory protein |
| AE003849_2407544 | AAF85331.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component system, regulatory protein |
| AE003849_2472975 | AAF85390.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component system, regulatory protein |
| AE003849_2230084 | AAF85151.1 | 32653 | COG1278 | Cold shock proteins | cold shock protein |
| AE003849_2500290 | AAF85419.1 | 32653 | COG1278 | Cold shock proteins | temperature acclimation protein B |
| AE003849_223451 | AAF83029.1 | 35604 | COG1846 | Transcriptional regulators | transcriptional regulator (MarR family) |
| AE003849_1301820 | AAF84163.1 | 35604 | COG1846 | Transcriptional regulators | transcriptional regulator (MarR family) |
| AE003849_928656 | AAF83782.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | transcriptional regulator (LuxR/UhpA family) |
| AE003849_2490561 | AAF85405.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | transcriptional regulator (LuxR/UhpA family) |
| AE003849_2006148 | AAF84909.1 | 13426 | COG2944 | Predicted transcriptional regulator | hypothetical protein |
| AE003849_1630176 | AAF84519.1 | 13426 | COG2944 | Predicted transcriptional regulator | hypothetical protein |
| AE003849_2655084 | AAF85548.1 | 9496 | COG3636 | Predicted transcriptional regulator | conserved hypothetical protein |
| AE003849_1540198 | AAF84405.1 | 9496 | COG3636 | Predicted transcriptional regulator | conserved hypothetical protein |
| AE003849_1624326 | AAF84511.1 | 9496 | COG3636 | Predicted transcriptional regulator | conserved hypothetical protein |
| Excluded Genes in xylellafastidiosa9a5c : K |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE003849_650674 | AAF83490.1 | 20172 | COG0553 | Superfamily II DNA/RNA helicases, SNF2 family | phage-related protein |
| AE003849_2181723 | AAF85094.1 | 20172 | COG0553 | Superfamily II DNA/RNA helicases, SNF2 family | phage-related protein |
| AE003849_2401429 | AAF85326.1 | 20172 | COG0553 | Superfamily II DNA/RNA helicases, SNF2 family | phage-related protein |
| AE003849_661716 | AAF83506.1 | 28809 | COG2932 | Predicted transcriptional regulator | phage-related repressor protein |
| AE003849_1596393 | AAF84467.1 | 28809 | COG2932 | Predicted transcriptional regulator | phage-related repressor protein |
| AE003849_655043 | AAF83494.1 | 18174 | COG3617 | Prophage antirepressor | phage-related protein |
| AE003849_1599063 | AAF84472.1 | 18174 | COG3617 | Prophage antirepressor | phage-related protein |
| AE003849_2396898 | AAF85322.1 | 18174 | COG3617 | Prophage antirepressor | phage-related protein |
| AE003849_664858 | AAF83514.1 | 4905 | COG3617 | Prophage antirepressor | phage-related protein |
| AE003849_1587790 | AAF84454.1 | 4905 | COG3617 | Prophage antirepressor | phage-related protein |
