All COGs for vibriocholerae_n16961_o1 : K
Genes (#)COGCOG description
1COG0085DNA-directed RNA polymerase, beta subunit/140 kD subunit
1COG0086DNA-directed RNA polymerase, beta' subunit/160 kD subunit
2COG0317Guanosine polyphosphate pyrophosphohydrolases/synthetases
5COG0454Histone acetyltransferase HPA2 and related acetyltransferases
9COG0513Superfamily II DNA and RNA helicases
3COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
33COG0583Transcriptional regulator
2COG0640Predicted transcriptional regulators
12COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
2COG0782Transcription elongation factor
3COG0789Predicted transcriptional regulators
1COG1191DNA-directed RNA polymerase specialized sigma subunit
2COG1199Rad3-related DNA helicases
3COG1221Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
4COG1278Cold shock proteins
2COG1309Transcriptional regulator
4COG1349Transcriptional regulators of sugar metabolism
4COG1396Predicted transcriptional regulators
5COG1522Transcriptional regulators
3COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
10COG1609Transcriptional regulators
2COG1737Transcriptional regulators
1COG1802Transcriptional regulators
2COG1846Transcriptional regulators
5COG1940Transcriptional regulator/sugar kinase
1COG2186Transcriptional regulators
2COG2188Transcriptional regulators
6COG2197Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
5COG2207AraC-type DNA-binding domain-containing proteins
2COG2771DNA-binding HTH domain-containing proteins
2COG3070Regulator of competence-specific genes
2COG3279Response regulator of the LytR/AlgR family
1COG3283Transcriptional regulator of aromatic amino acids metabolism
2COG3311Predicted transcriptional regulator
1COG3604Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains

Included Genes in vibriocholerae_n16961_o1 : K
gene_idprotein_idgene_familycogcog_descriptionproduct
AE003852_340272AAF93501.19296COG0085DNA-directed RNA polymerase, beta subunit/140 kD subunitDNA-directed RNA polymerase, beta subunit
AE003852_344504AAF93502.19296COG0086DNA-directed RNA polymerase, beta' subunit/160 kD subunitDNA-directed RNA polymerase, beta' subunit
AE003852_2880976AAF95850.132745COG0317Guanosine polyphosphate pyrophosphohydrolases/synthetasesguanosine-3',5'-bis(diphosphate)3'-pyrophosphohydrolase
AE003852_2630823AAF95593.132745COG0317Guanosine polyphosphate pyrophosphohydrolases/synthetasesGTP pyrophosphokinase
AE003853_374494AAF96306.121653COG0454Histone acetyltransferase HPA2 and related acetyltransferasesacetyltransferase, putative
AE003853_420656AAF96383.121653COG0454Histone acetyltransferase HPA2 and related acetyltransferasesacetyltransferase, putative
AE003853_424892AAF96391.18663COG0454Histone acetyltransferase HPA2 and related acetyltransferasesconserved hypothetical protein
AE003853_421787AAF96385.18663COG0454Histone acetyltransferase HPA2 and related acetyltransferasesconserved hypothetical protein
AE003853_325890AAF96226.18663COG0454Histone acetyltransferase HPA2 and related acetyltransferasesconserved hypothetical protein
AE003852_1499666AAF94564.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase RhlE
AE003852_705587AAF93826.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase SrmB
AE003852_316344AAF93479.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase RhlB
AE003852_2746119AAF95705.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase DbpA
AE003853_67304AAF95975.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase, DEAD box family
AE003853_220767AAF96116.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase RhlE
AE003853_711450AAF96666.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase, DEAD box family
AE003853_944006AAF96886.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase, DEAD box family
AE003853_746491AAF96702.133241COG0513Superfamily II DNA and RNA helicasesATP-dependent RNA helicase DeaD
AE003852_564732AAF93702.14991COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)RNA polymerase sigma-38 factor
AE003852_140004AAF93327.14991COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)RNA polymerase sigma-32 factor
AE003852_550407AAF93687.14991COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)RNA polymerase sigma factor RpoD
AE003853_775834AAF96728.123489COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_1673280AAF94715.123489COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_837233AAF93946.123489COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_2666145AAF95627.123489COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_68250AAF93246.123489COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003853_945384AAF96887.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003853_929998AAF96878.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003853_829467AAF96774.133815COG0583Transcriptional regulatorD-serine deaminase activator
AE003853_570592AAF96536.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003853_513839AAF96477.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003853_478273AAF96444.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_2261526AAF95249.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_2477288AAF95468.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_1480565AAF94548.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_1699073AAF94742.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_1690215AAF94734.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_503761AAF93647.133815COG0583Transcriptional regulatoriron-regulated virulence regulatory protein IrgB
AE003852_724055AAF93842.133815COG0583Transcriptional regulatortranscriptional activator protein NhaR
AE003852_843733AAF93952.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_955014AAF94058.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_1119081AAF94208.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_1729989AAF94771.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_2108531AAF95103.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_2097183AAF95095.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_2808285AAF95777.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_2945749AAF95899.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003853_92604AAF95996.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003853_842137AAF96786.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003853_1009003AAF96952.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003853_1004468AAF96949.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_787493AAF93897.133815COG0583Transcriptional regulatortranscriptional regulator, LysR family
AE003852_1837756AAF94856.133815COG0583Transcriptional regulatortranscriptional activator MetR
AE003853_913349AAF96860.133815COG0583Transcriptional regulatorglycine cleavage operon activator, putative
AE003853_577872AAF96543.134670COG0640Predicted transcriptional regulatorstranscriptional regulator, ArsR family
AE003852_725144AAF93843.134670COG0640Predicted transcriptional regulatorstranscriptional activator HlyU
AE003853_504647AAF96468.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domaintranscriptional regulator
AE003852_1764280AAF94789.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domainDNA-binding response regulator
AE003852_1857523AAF94869.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domainDNA-binding response regulator TorR
AE003852_772267AAF93884.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domainDNA-binding response regulator PhoB
AE003852_2524550AAF95511.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domainaerobic respiration control protein FexA
AE003852_2859805AAF95833.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domaintranscriptional regulator CpxR
AE003852_2888451AAF95854.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domaintranscriptional regulator OmpR,
AE003853_260372AAF96150.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domaintranscriptional regulator
AE003853_276337AAF96167.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domaintranscriptional regulator
AE003853_470476AAF96435.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domainDNA-binding response regulator
AE003853_1061510AAF96996.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domainDNA-binding response regulator
AE003852_1403673AAF94478.127701COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domainDNA-binding response regulator
AE003852_676405AAF93800.16876COG0782Transcription elongation factortranscription elongation factor GreA
AE003852_2889311AAF95855.16876COG0782Transcription elongation factortranscription elongation factor GreB
AE003852_282765AAF93452.117728COG0789Predicted transcriptional regulatorstranscriptional regulator, MerR family
AE003852_1039893AAF94136.117728COG0789Predicted transcriptional regulatorstranscriptional regulator, MerR family
AE003853_94834AAF95998.117728COG0789Predicted transcriptional regulatorssoxR protein
AE003852_2221181AAF95212.14991COG1191DNA-directed RNA polymerase specialized sigma subunitRNA polymerase sigma factor for flagellar operon FliA
AE003852_1994235AAF95003.16067COG1199Rad3-related DNA helicasesATP-dependent helicase, DinG family
AE003852_2141426AAF95138.16067COG1199Rad3-related DNA helicasesATP-dependent helicase, DinG family
AE003852_712395AAF93830.131616COG1221Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domainsigma-54 dependent transcriptional regulator
AE003852_1812689AAF94829.131616COG1221Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domainpsp operon transcriptional activator
AE003852_2291312AAF95282.131616COG1221Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domainsigma-54 dependent transcriptional activator
AE003852_1211976AAF94301.132653COG1278Cold shock proteinscold shock-like protein CspD
AE003853_203449AAF96097.132653COG1278Cold shock proteinscold shock DNA-binding domain protein
AE003853_886068AAF96830.132653COG1278Cold shock proteinscold shock domain family protein
AE003853_184257AAF96079.132653COG1278Cold shock proteinscold shock transcriptional regulator CspA
AE003852_1500918AAF94565.123354COG1309Transcriptional regulatortranscriptional regulator, TetR family
AE003852_1881716AAF94896.123354COG1309Transcriptional regulatortranscriptional regulator, TetR family
AE003852_1665566AAF94707.134320COG1349Transcriptional regulators of sugar metabolismglycerol-3-phosphate regulon repressor
AE003853_267445AAF96158.134320COG1349Transcriptional regulators of sugar metabolismtranscriptional regulator, DeoR family
AE003853_891370AAF96836.134320COG1349Transcriptional regulators of sugar metabolismtranscriptional regulator, DeoR family
AE003852_516560AAF93659.134320COG1349Transcriptional regulators of sugar metabolismtranscriptional regulator, DeoR family
AE003852_1572943AAF94621.116629COG1396Predicted transcriptional regulatorstranscriptional repressor RstR
AE003852_1566027AAF94612.116629COG1396Predicted transcriptional regulatorstranscriptional repressor RstR
AE003852_2120030AAF95116.126440COG1396Predicted transcriptional regulatorstranscriptional regulator, HTH_3 family
AE003853_298001AAF96189.126440COG1396Predicted transcriptional regulatorstranscriptional regulator, HTH_3 family
AE003853_1017946AAF96962.133976COG1522Transcriptional regulatorstranscriptional regulator, AsnC family
AE003852_70975AAF93249.133976COG1522Transcriptional regulatorstranscriptional regulator AsnC
AE003852_1130011AAF94221.133976COG1522Transcriptional regulatorstranscriptional regulator, AsnC family
AE003852_1848654AAF94863.133976COG1522Transcriptional regulatorstranscriptional regulator, AsnC family
AE003852_2054880AAF95052.133976COG1522Transcriptional regulatorsleucine-responsive regulatory protein
AE003852_2456252AAF95446.135013COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 homologRNA polymerase sigma-70 factor, ECF subfamily
AE003852_1113801AAF94204.135013COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 homologRNA polymerase sigma-70 factor, ECF subfamily
AE003852_2649174AAF95609.135013COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 homologRNA polymerase sigma-E factor
AE003852_2486484AAF95481.125605COG1609Transcriptional regulatorstranscriptional regulator, LacI family
AE003852_298752AAF93463.125605COG1609Transcriptional regulatorsgluconate utilization system gnt-I transcriptional repressor
AE003852_1361218AAF94445.125605COG1609Transcriptional regulatorstranscriptional regulator, LacI family
AE003852_1859521AAF94871.125605COG1609Transcriptional regulatorstranscriptional regulator, LacI family
AE003852_2844038AAF95818.125605COG1609Transcriptional regulatorstranscriptional repressor, LacI family
AE003853_146647AAF96046.125605COG1609Transcriptional regulatorsribose operon repressor
AE003853_608100AAF96574.125605COG1609Transcriptional regulatorstranscriptional regulator, LacI family
AE003852_968601AAF94071.125605COG1609Transcriptional regulatorstrehalose operon repressor
AE003852_1668122AAF94711.125605COG1609Transcriptional regulatorstranscriptional regulator, LacI family
AE003853_588792AAF96555.125605COG1609Transcriptional regulatorssucrose operon repressor ScrR, putative
AE003852_212440AAF93380.18467COG1737Transcriptional regulatorsconserved hypothetical protein
AE003852_1219156AAF94307.18467COG1737Transcriptional regulatorsconserved hypothetical protein
AE003852_1419022AAF94493.132965COG1802Transcriptional regulatorstranscriptional regulator, GntR family
AE003853_904127AAF96851.135604COG1846Transcriptional regulatorstranscriptional regulator, MarR family
AE003853_957933AAF96901.135604COG1846Transcriptional regulatorstranscriptional regulator, MarR family
AE003852_1930883AAF94931.122273COG1940Transcriptional regulator/sugar kinaseROK family protein
AE003852_1644672AAF94686.122273COG1940Transcriptional regulator/sugar kinaseROK family protein
AE003852_275674AAF93445.122273COG1940Transcriptional regulator/sugar kinaseROK family protein
AE003852_2159327AAF95155.133539COG1940Transcriptional regulator/sugar kinasetranscriptional regulator, ROK family
AE003852_1058502AAF94154.133539COG1940Transcriptional regulator/sugar kinaseN-acetylglucosamine repressor
AE003852_2587605AAF95558.132965COG2186Transcriptional regulatorspyruvate dehydrogenase complex repressor
AE003852_1281866AAF94365.134181COG2188Transcriptional regulatorshistidine utilization repressor
AE003853_536432AAF96501.134181COG2188Transcriptional regulatorsrepressor protein PhnR, putative
AE003852_1352113AAF94436.127701COG2197Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domaintranscriptional regulator, LuxR family
AE003852_1717391AAF94758.127701COG2197Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domainresponse regulator
AE003853_617798AAF96582.127701COG2197Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domaintranscriptional regulator UhpA
AE003852_1290575AAF94372.127701COG2197Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domaintranscriptional regulator, LuxR family
AE003852_2873971AAF95842.127701COG2197Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domaintranscriptional regulator, LuxR family
AE003852_845591AAF93955.127701COG2197Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domaintranscriptional regulator CitB
AE003853_955133AAF96897.110678COG2207AraC-type DNA-binding domain-containing proteinstranscriptional regulator, AraC/XylS family
AE003852_197873AAF93368.110678COG2207AraC-type DNA-binding domain-containing proteinstranscriptional regulator, AraC/XylS family
AE003853_282737AAF96177.124165COG2207AraC-type DNA-binding domain-containing proteinstranscriptional regulator, AraC/XylS family
AE003853_888345AAF96834.124165COG2207AraC-type DNA-binding domain-containing proteinstranscriptional regulator, AraC/XylS family
AE003853_1027022AAF96967.124165COG2207AraC-type DNA-binding domain-containing proteinstranscriptional regulator, AraC/XylS family
AE003853_901426AAF96848.127701COG2771DNA-binding HTH domain-containing proteinstranscriptional regulator, LuxR family
AE003852_421678AAF93569.127701COG2771DNA-binding HTH domain-containing proteinstranscriptional regulator, LuxR family
AE003852_1224975AAF94312.16589COG3070Regulator of competence-specific genesconserved hypothetical protein
AE003852_1860890AAF94872.16589COG3070Regulator of competence-specific genesconserved hypothetical protein
AE003853_801121AAF96748.133796COG3279Response regulator of the LytR/AlgR familyresponse regulator
AE003852_740893AAF93858.133796COG3279Response regulator of the LytR/AlgR familyresponse regulator
AE003852_1389975AAF94466.131616COG3283Transcriptional regulator of aromatic amino acids metabolismtranscriptional regulator TyrR
AE003852_530402AAF93670.119764COG3311Predicted transcriptional regulatortranscriptional regulator
AE003852_1935801AAF94934.119764COG3311Predicted transcriptional regulatortranscriptional regulator
AE003853_200338AAF96095.131616COG3604Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domainssigma-54 dependent transcriptional regulator

Excluded Genes in vibriocholerae_n16961_o1 : K
gene_idprotein_idgene_familycogcog_descriptionproduct
AE003853_394041AAF96342.134290COG0454Histone acetyltransferase HPA2 and related acetyltransferasesacetyltransferase, putative
AE003853_433710AAF96408.134290COG0454Histone acetyltransferase HPA2 and related acetyltransferasesacetyltransferase, putative

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