| Included Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : K |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE006468_4365908 | AAL22981.1 | 9296 | COG0085 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | RNA polymerase, beta subunit |
| AE006468_4370013 | AAL22982.1 | 9296 | COG0086 | DNA-directed RNA polymerase, beta' subunit/160 kD subunit | RNA polymerase, beta prime subunit |
| AE006468_3102880 | AAL21836.1 | 32745 | COG0317 | Guanosine polyphosphate pyrophosphohydrolases/synthetases | (p)ppGpp synthetase I |
| AE006468_3934070 | AAL22601.1 | 32745 | COG0317 | Guanosine polyphosphate pyrophosphohydrolases/synthetases | (p)ppGpp synthetase II |
| AE006468_4400247 | AAL23005.1 | 13504 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | putative acetyltransferase |
| AE006468_3829911 | AAL22503.1 | 13504 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | putative acetyltransferase |
| AE006468_3047619 | AAL21785.1 | 8663 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | putative acetyltransferase |
| AE006468_3837736 | AAL22511.1 | 8663 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | putative acetyltransferase |
| AE006468_4562850 | AAL23142.1 | 8663 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | putative acetyltransferase |
| AE006468_2782903 | AAL21537.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| AE006468_3446185 | AAL22152.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | cysteine sulfinate desulfinase |
| AE006468_885586 | AAL19757.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | putative ATP-dependent RNA helicase |
| AE006468_1748288 | AAL20573.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| AE006468_4123427 | AAL22764.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | putative helicase |
| AE006468_3065494 | AAL21804.1 | 4991 | COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | sigma S (sigma 38) factor of RNA polymerase |
| AE006468_3376266 | AAL22085.1 | 4991 | COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | sigma D factor of RNA polymerase |
| AE006468_3735927 | AAL22428.1 | 4991 | COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | sigma H factor of RNA polymerase |
| AE006468_33364 | AAL18994.1 | 22267 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_15014 | AAL18978.1 | 22267 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_3928434 | AAL22595.1 | 23489 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_134569 | AAL19079.1 | 23489 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_4055233 | AAL22706.1 | 23489 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_4001949 | AAL22660.1 | 33815 | COG0583 | Transcriptional regulator | LysR family transcriptional activator |
| AE006468_4343080 | AAL22963.1 | 33815 | COG0583 | Transcriptional regulator | regulatory protein sensor for oxidative stress |
| AE006468_4509386 | AAL23094.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_1714895 | AAL20543.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulators |
| AE006468_1769947 | AAL20594.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_2147471 | AAL20973.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_2300547 | AAL21105.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_2386536 | AAL21182.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_2536770 | AAL21318.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_2532394 | AAL21314.1 | 33815 | COG0583 | Transcriptional regulator | regulator for XapA |
| AE006468_2784255 | AAL21538.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_3134272 | AAL21860.1 | 33815 | COG0583 | Transcriptional regulator | regulator of gcv operon |
| AE006468_3174075 | AAL21890.1 | 33815 | COG0583 | Transcriptional regulator | positive LysR family transcriptional regulator |
| AE006468_3279660 | AAL21995.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_3400012 | AAL22108.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_3533298 | AAL22236.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_574850 | AAL19468.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_755353 | AAL19636.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_827344 | AAL19703.1 | 33815 | COG0583 | Transcriptional regulator | transcriptional regulator, lysR family |
| AE006468_932023 | AAL19795.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_1506991 | AAL20351.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_1564074 | AAL20406.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_4765066 | AAL23329.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_376663 | AAL19287.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_47418 | AAL19004.1 | 33815 | COG0583 | Transcriptional regulator | transcriptional activator of nhaA |
| AE006468_295893 | AAL19213.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_1029345 | AAL19887.1 | 33815 | COG0583 | Transcriptional regulator | putative transcriptional regulator, lysR family |
| AE006468_1600208 | AAL20442.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_2276882 | AAL21084.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_2440125 | AAL21231.1 | 33815 | COG0583 | Transcriptional regulator | LysR family NADH dehydrogenase transcriptional repressor |
| AE006468_3054575 | AAL21792.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulators |
| AE006468_3180959 | AAL21896.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_3780701 | AAL22467.1 | 33815 | COG0583 | Transcriptional regulator | putative LysR family transcriptional regulator |
| AE006468_4168560 | AAL22808.1 | 33815 | COG0583 | Transcriptional regulator | regulator for metE and metH |
| AE006468_4269746 | AAL22899.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response reguator in two-component regulatory system with CpxA |
| AE006468_4533719 | AAL23116.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response regulator in two-component regulatory system with BasS |
| AE006468_2224537 | AAL21035.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response regulator in two-component regulatory system with BaeS |
| AE006468_2933761 | AAL21670.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | tricarboxylic transport regulatory protein |
| AE006468_4024667 | AAL22683.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response regulator in multi-component regualtory system wtih TorS (sensory kinase) and TorT (periplasmic sensor) |
| AE006468_1183637 | AAL20028.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Copper resistance transcriptional regulatory protein |
| AE006468_1318689 | AAL20160.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response regulator in two-component regulatory system with PhoQ |
| AE006468_4855370 | AAL23413.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response regulator (OmpR family) in two-component regulatory system with ArcB (or CpxA) |
| AE006468_450795 | AAL19351.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response regulator in two-component regulatory system with PhoR (or CreC) |
| AE006468_3659606 | AAL22364.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response regulator in two-component regulatory system with EnvZ |
| AE006468_766339 | AAL19646.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response regulator in two-component regulatory system with KdpD |
| AE006468_1551289 | AAL20394.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response regulator in two-component regulatory system with RstB (OmpR family) |
| AE006468_4844233 | AAL23403.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | response regulator in two-component regulatory system with CreC |
| AE006468_3340798 | AAL22051.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | putative transcriptional regulator |
| AE006468_3467930 | AAL22169.1 | 6876 | COG0782 | Transcription elongation factor | transcription elongation factor |
| AE006468_3660551 | AAL22365.1 | 6876 | COG0782 | Transcription elongation factor | transcription elongation factor and transcript cleavage |
| AE006468_2256368 | AAL21064.1 | 11984 | COG0789 | Predicted transcriptional regulators | putative transcriptional repressor (MerR family) |
| AE006468_1475260 | AAL20314.1 | 11984 | COG0789 | Predicted transcriptional regulators | putative regulatory proteins, merR family |
| AE006468_4504380 | AAL23090.1 | 17728 | COG0789 | Predicted transcriptional regulators | redox-sensing transcriptional activator SoxR |
| AE006468_3581965 | AAL22275.1 | 17728 | COG0789 | Predicted transcriptional regulators | Zn(II)-responsive transcriptional regulator |
| AE006468_400860 | AAL19308.1 | 17728 | COG0789 | Predicted transcriptional regulators | putative transcriptional regulator |
| AE006468_4565999 | AAL23144.1 | 17728 | COG0789 | Predicted transcriptional regulators | putative merR family bacterial regulatory protein |
| AE006468_560556 | AAL19453.1 | 17728 | COG0789 | Predicted transcriptional regulators | putative heavy metal transcriptional repressor (MerR family) |
| AE006468_2548503 | AAL21330.1 | 6157 | COG1167 | Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs | putative gntR family regulatory protein |
| AE006468_2949731 | AAL21688.1 | 6157 | COG1167 | Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs | putative gntR family regulatory protein |
| AE006468_1688394 | AAL20516.1 | 6157 | COG1167 | Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs | putative gntR family regulatory protein |
| AE006468_2044747 | AAL20868.1 | 4991 | COG1191 | DNA-directed RNA polymerase specialized sigma subunit | sigma F (sigma 28) factor of RNA polymerase |
| AE006468_1918518 | AAL20736.1 | 6067 | COG1199 | Rad3-related DNA helicases | putative DNA helicase |
| AE006468_887158 | AAL19758.1 | 6067 | COG1199 | Rad3-related DNA helicases | LexA regulated (SOS) repair enzyme |
| AE006468_1782586 | AAL20608.1 | 31616 | COG1221 | Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain | transcription activator |
| AE006468_416087 | AAL19321.1 | 31616 | COG1221 | Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain | regulator for prp operon (EBP family) |
| AE006468_4792067 | AAL23352.1 | 4661 | COG1221 | Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain | putative NtrC family transcriptional regulator, ATPase domain |
| AE006468_2079225 | AAL20906.1 | 32653 | COG1278 | Cold shock proteins | putative cold-shock protein |
| AE006468_3836439 | AAL22509.1 | 32653 | COG1278 | Cold shock proteins | major cold shock protein 7.4 |
| AE006468_692915 | AAL19580.1 | 32653 | COG1278 | Cold shock proteins | RNA chaperone, negative regulator of cspA transcription |
| AE006468_1330832 | AAL20172.1 | 32653 | COG1278 | Cold shock proteins | homology with cold shock proteins |
| AE006468_1021802 | AAL19879.1 | 32653 | COG1278 | Cold shock proteins | similar to CspA but not cold shock induced |
| AE006468_1935547 | AAL20752.1 | 32653 | COG1278 | Cold shock proteins | cold shock protein |
| AE006468_3560028 | AAL22258.1 | 12074 | COG1309 | Transcriptional regulator | transcriptional repressor for envCD (acrEF) |
| AE006468_533754 | AAL19431.1 | 12074 | COG1309 | Transcriptional regulator | acrAB operon repressor (TetR/AcrR family) |
| AE006468_1767332 | AAL20591.1 | 31756 | COG1309 | Transcriptional regulator | putative AraC family bacterial regulatory helix-turn-helix protein |
| AE006468_1296551 | AAL20142.1 | 31756 | COG1309 | Transcriptional regulator | putative transcriptional repressor (TetR/AcrR family) |
| AE006468_1464806 | AAL20306.1 | 12974 | COG1349 | Transcriptional regulators of sugar metabolism | putative regulatory protein, deoR family |
| AE006468_3994836 | AAL22652.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | putative deoR family regulatory protein |
| AE006468_4235755 | AAL22864.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | putative glycerol-3-phosphate regulon repressor |
| AE006468_1706567 | AAL20536.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | putative DeoR family transcriptional repressor of sgc operon |
| AE006468_3061824 | AAL21799.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | putative regulatory protein, deoR family |
| AE006468_3431469 | AAL22134.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | transcriptional regulator of sugar metabolism |
| AE006468_3686448 | AAL22384.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | transcriptional repressor of the glp operon |
| AE006468_936744 | AAL19800.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | transcriptional repressor for deoxyribose operon (DeoR family) |
| AE006468_4622946 | AAL23201.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | putative transcriptional repressor |
| AE006468_193404 | AAL19128.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | putative LysR family transcriptional regulator |
| AE006468_1798912 | AAL20622.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | putative deoR family regulatory protein |
| AE006468_2981637 | AAL21717.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | transcriptional repressor for glucitol operon |
| AE006468_3131996 | AAL21857.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | positive regulator of the fuc operon |
| AE006468_1757889 | AAL20582.1 | 26440 | COG1396 | Predicted transcriptional regulators | putative transcriptional regulator |
| AE006468_1695679 | AAL20523.1 | 26440 | COG1396 | Predicted transcriptional regulators | putative oxidoreductase |
| AE006468_4407211 | AAL23011.1 | 32577 | COG1414 | Transcriptional regulator | acetate operon transcriptional repressor |
| AE006468_2399433 | AAL21193.1 | 32577 | COG1414 | Transcriptional regulator | putative transcriptional regulator |
| AE006468_3697979 | AAL22393.1 | 32577 | COG1414 | Transcriptional regulator | putative bacterial transcriptional regulator |
| AE006468_3854609 | AAL22526.1 | 32577 | COG1414 | Transcriptional regulator | IclR family transcriptional repressor |
| AE006468_576564 | AAL19470.1 | 32577 | COG1414 | Transcriptional regulator | putative regulatory protein |
| AE006468_1937671 | AAL20757.1 | 32577 | COG1414 | Transcriptional regulator | putative IclR family transcriptional repressor |
| AE006468_4705132 | AAL23282.1 | 6340 | COG1438 | Arginine repressor | putative arginine repressor |
| AE006468_3528028 | AAL22229.1 | 6340 | COG1438 | Arginine repressor | repressor of arg regulon |
| AE006468_4084699 | AAL22734.1 | 33976 | COG1522 | Transcriptional regulators | transcriptional regulator for asnA, gidA |
| AE006468_1036742 | AAL19894.1 | 33976 | COG1522 | Transcriptional regulators | regulator for lrp regulon and high-affinity branched-chain amino acid transport system |
| AE006468_516267 | AAL19414.1 | 33976 | COG1522 | Transcriptional regulators | putative transcriptional regulator (AsnC family) |
| AE006468_4096544 | AAL22744.1 | 25605 | COG1609 | Transcriptional regulators | transcriptional repressor for rbs operon (GalR/LacI family) |
| AE006468_4302181 | AAL22934.1 | 25605 | COG1609 | Transcriptional regulators | GalR/LacI family transcriptional repressor |
| AE006468_1632130 | AAL20473.1 | 25605 | COG1609 | Transcriptional regulators | putative transcriptional regulator |
| AE006468_2457383 | AAL21246.1 | 25605 | COG1609 | Transcriptional regulators | putative transcriptional regulator |
| AE006468_3171663 | AAL21888.1 | 25605 | COG1609 | Transcriptional regulators | putative transcriptional regulator |
| AE006468_3170624 | AAL21887.1 | 25605 | COG1609 | Transcriptional regulators | transcriptional repressor of galETK operon |
| AE006468_3712167 | AAL22403.1 | 25605 | COG1609 | Transcriptional regulators | transcriptional repressor gnt-I |
| AE006468_1507920 | AAL20352.1 | 25605 | COG1609 | Transcriptional regulators | transcriptional repressor for pur regulon, glyA, glnB, prsA, speA (GalR/LacI family) |
| AE006468_4698357 | AAL23274.1 | 25605 | COG1609 | Transcriptional regulators | transcriptional repressor of treABC |
| AE006468_3890132 | AAL22555.1 | 25605 | COG1609 | Transcriptional regulators | putative transcriptional regulator |
| AE006468_2288115 | AAL21095.1 | 25605 | COG1609 | Transcriptional regulators | GalR/LacI family transcriptional repressor of mgl operon |
| AE006468_3819242 | AAL22494.1 | 25605 | COG1609 | Transcriptional regulators | putative bacterial regulatory proteins |
| AE006468_4724731 | AAL23300.1 | 25605 | COG1609 | Transcriptional regulators | L-idonate regulator |
| AE006468_1981484 | AAL20803.1 | 8467 | COG1737 | Transcriptional regulators | putative transcriptional regulator |
| AE006468_2717588 | AAL21466.1 | 8467 | COG1737 | Transcriptional regulators | putative ABC superfamily transport protein |
| AE006468_1215275 | AAL20058.1 | 8467 | COG1737 | Transcriptional regulators | putative transcriptional regulator |
| AE006468_1587986 | AAL20429.1 | 32965 | COG1802 | Transcriptional regulators | putative gntR family regulatory protein |
| AE006468_3525275 | AAL22226.1 | 32965 | COG1802 | Transcriptional regulators | putative gntR family regulatory protein |
| AE006468_2379349 | AAL21176.1 | 32965 | COG1802 | Transcriptional regulators | putative gntR family regulatory protein |
| AE006468_1597497 | AAL20439.1 | 35604 | COG1846 | Transcriptional regulators | transcriptional repressor of marRAB operon |
| AE006468_2961121 | AAL21698.1 | 35604 | COG1846 | Transcriptional regulators | transcriptional repressor of emrAB operon |
| AE006468_1519880 | AAL20366.1 | 35604 | COG1846 | Transcriptional regulators | MarR family transcriptional regulator for hemolysin |
| AE006468_3869680 | AAL22540.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | putative transcriptional regulator |
| AE006468_1305845 | AAL20149.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | putative regulator (NagC/XylR family) |
| AE006468_443966 | AAL19347.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | putative sugar kinase/putative transcriptional regulator (NagC/XylR family) |
| AE006468_3504905 | AAL22205.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | putative ManNAc kinase |
| AE006468_1565101 | AAL20407.1 | 33539 | COG1940 | Transcriptional regulator/sugar kinase | transcriptional repressor of ptsG and ptsHI |
| AE006468_741692 | AAL19626.1 | 33539 | COG1940 | Transcriptional regulator/sugar kinase | transcriptional repressor of nag (N-acetylglucosamine) operon (NagC/XylR family) |
| AE006468_2682931 | AAL21438.1 | 35488 | COG1959 | Predicted transcriptional regulator | hypothetical protein |
| AE006468_4610601 | AAL23187.1 | 35488 | COG1959 | Predicted transcriptional regulator | putative negative regulator |
| AE006468_2330961 | AAL21132.1 | 10340 | COG1974 | SOS-response transcriptional repressors (RecA-mediated autopeptidases) | putative peptidase |
| AE006468_2081163 | AAL20908.1 | 10340 | COG1974 | SOS-response transcriptional repressors (RecA-mediated autopeptidases) | error-prone repair: SOS-response transcriptional repressor |
| AE006468_4098947 | AAL22746.1 | 32965 | COG2186 | Transcriptional regulators | putative gntR family regulatory protein |
| AE006468_3247098 | AAL21959.1 | 32965 | COG2186 | Transcriptional regulators | putative gntR family regulatory protein |
| AE006468_3509147 | AAL22209.1 | 32965 | COG2186 | Transcriptional regulators | putative gntR family regulatory protein |
| AE006468_3887564 | AAL22552.1 | 32965 | COG2186 | Transcriptional regulators | putative transcriptional GntR family regulator for lct operon |
| AE006468_4033255 | AAL22689.1 | 32965 | COG2186 | Transcriptional regulators | galactonate operon transcriptional repressor |
| AE006468_175316 | AAL19115.1 | 32965 | COG2186 | Transcriptional regulators | transcriptional repressor for pyruvate dehydrogenase complex (GntR family) |
| AE006468_4761052 | AAL23325.1 | 32965 | COG2186 | Transcriptional regulators | transcriptional repressor for uxu operon |
| AE006468_2239479 | AAL21048.1 | 34181 | COG2188 | Transcriptional regulators | putative gntR family regulatory protein |
| AE006468_3774529 | AAL22462.1 | 34181 | COG2188 | Transcriptional regulators | putative gntR family regulatory protein |
| AE006468_483349 | AAL19384.1 | 34181 | COG2188 | Transcriptional regulators | 2-aminoethylphosphonate transport, repressor |
| AE006468_854047 | AAL19727.1 | 34181 | COG2188 | Transcriptional regulators | histidine utilization repressor |
| AE006468_3990554 | AAL22648.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | response regulator (repressor) in two-component regulatory system wtih UhpB |
| AE006468_1866071 | AAL20682.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | response regulator in two-component regulatory system with NarX (or NarQ) |
| AE006468_2346702 | AAL21148.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | response regulator in two-component regulatory system with NarQ (or NarX) |
| AE006468_1476167 | AAL20315.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | secretion system regulator: transcriptonal activator |
| AE006468_610256 | AAL19503.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | fimbrial protein Z |
| AE006468_2038247 | AAL20859.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | putative LuxR/UhpA family response regulator |
| AE006468_2369994 | AAL21171.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | LuxR/UhpA family response regulator in two-component regulatory system with RcsC |
| AE006468_3012107 | AAL21747.1 | 17095 | COG2207 | AraC-type DNA-binding domain-containing proteins | araC family bacterial regulatory helix-turn-helix protein |
| AE006468_4560882 | AAL23139.1 | 17095 | COG2207 | AraC-type DNA-binding domain-containing proteins | putative AraC-type DNA-binding domain-containing protein |
| AE006468_3017836 | AAL21755.1 | 17095 | COG2207 | AraC-type DNA-binding domain-containing proteins | regulatory helix-turn-helix proteins, araC family |
| AE006468_4503970 | AAL23089.1 | 19718 | COG2207 | AraC-type DNA-binding domain-containing proteins | transcriptional activator of superoxide response regulon |
| AE006468_639016 | AAL19532.1 | 19718 | COG2207 | AraC-type DNA-binding domain-containing proteins | putative regulatory protein |
| AE006468_1597094 | AAL20438.1 | 19718 | COG2207 | AraC-type DNA-binding domain-containing proteins | AraC/XylS family transcriptional activator of defense systems |
| AE006468_1764396 | AAL20588.1 | 4471 | COG2207 | AraC-type DNA-binding domain-containing proteins | putative bacterial regulatory helix-turn-helix proteins, araC family |
| AE006468_4842666 | AAL23401.1 | 4471 | COG2207 | AraC-type DNA-binding domain-containing proteins | transcriptional regulator |
| AE006468_4260054 | AAL22889.1 | 8420 | COG2207 | AraC-type DNA-binding domain-containing proteins | positive regulator for rhaRS operon |
| AE006468_4259065 | AAL22888.1 | 8420 | COG2207 | AraC-type DNA-binding domain-containing proteins | positive regulator for rhaBAD operon |
| AE006468_1229728 | AAL20072.1 | 27701 | COG2771 | DNA-binding HTH domain-containing proteins | putative transcriptional regulator |
| AE006468_4241984 | AAL22872.1 | 10622 | COG2944 | Predicted transcriptional regulator | putative merR family bacterial regulatory protein |
| AE006468_3835860 | AAL22508.1 | 10622 | COG2944 | Predicted transcriptional regulator | putative transcriptional regulator |
| AE006468_1776180 | AAL20600.1 | 31616 | COG3283 | Transcriptional regulator of aromatic amino acids metabolism | transcriptional regulator of aromatic amino acid biosynthesis genes (aroF, aroG, tyrA) and aromatic amino acid transport |
| AE006468_2983365 | AAL21719.1 | 31616 | COG3604 | Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains | putative EBP family regulator |
| AE006468_17043 | AAL18981.1 | 7755 | COG3710 | DNA-binding winged-HTH domains | putative protein |
| AE006468_34376 | AAL18995.1 | 7755 | COG3710 | DNA-binding winged-HTH domains | putative transcription regulator |
| AE006468_32545 | AAL18993.1 | 7755 | COG3710 | DNA-binding winged-HTH domains | putative transcription regulator |
| AE006468_714545 | AAL19603.1 | 31616 | COG3829 | Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains | putative sigma-54 dependent transcriptional regulator |
| AE006468_2472873 | AAL21262.1 | 31616 | COG3829 | Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains | putative regulatory protein |
| AE006468_3972549 | AAL22631.1 | 4661 | COG3933 | Transcriptional antiterminator | putative NtrC family transcriptional regulator |
| AE006468_629330 | AAL19522.1 | 4661 | COG3933 | Transcriptional antiterminator | putative inner membrane protein |
| AE006468_689657 | AAL19577.1 | 27701 | COG4565 | Response regulator of citrate/malate metabolism | response regulator in two-component regulatory system with DpiB |
| AE006468_61106 | AAL19016.1 | 27701 | COG4565 | Response regulator of citrate/malate metabolism | putative transcription regulator sensor for citrate |
| AE006468_4549177 | AAL23127.1 | 27701 | COG4565 | Response regulator of citrate/malate metabolism | response regulator in two-component regulatory system with DcuS |
| AE006468_3476208 | AAL22177.1 | 34690 | COG5007 | Predicted transcriptional regulator, BolA superfamily | putative BolA family transcriptional regulator |
