| All COGs for listeriainnocua_clip11262 : K |
| Genes (#) | COG | COG description |
| 1 | COG0085 | DNA-directed RNA polymerase, beta subunit/140 kD subunit |
| 1 | COG0086 | DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
| 4 | COG0513 | Superfamily II DNA and RNA helicases |
| 1 | COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
| 5 | COG0583 | Transcriptional regulator |
| 9 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
| 5 | COG0789 | Predicted transcriptional regulators |
| 1 | COG1191 | DNA-directed RNA polymerase specialized sigma subunit |
| 1 | COG1221 | Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
| 3 | COG1278 | Cold shock proteins |
| 2 | COG1309 | Transcriptional regulator |
| 2 | COG1316 | Transcriptional regulator |
| 6 | COG1349 | Transcriptional regulators of sugar metabolism |
| 3 | COG1396 | Predicted transcriptional regulators |
| 4 | COG1475 | Predicted transcriptional regulators |
| 9 | COG1609 | Transcriptional regulators |
| 3 | COG1695 | Predicted transcriptional regulators |
| 4 | COG1725 | Predicted transcriptional regulators |
| 3 | COG1733 | Predicted transcriptional regulators |
| 2 | COG1737 | Transcriptional regulators |
| 2 | COG1846 | Transcriptional regulators |
| 6 | COG1940 | Transcriptional regulator/sugar kinase |
| 3 | COG1959 | Predicted transcriptional regulator |
| 6 | COG2188 | Transcriptional regulators |
| 2 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
| 3 | COG2378 | Predicted transcriptional regulator |
| 2 | COG2390 | Transcriptional regulator, contains sigma factor-related N-terminal domain |
| 1 | COG3933 | Transcriptional antiterminator |
| Included Genes in listeriainnocua_clip11262 : K |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AL592022_291763 | CAC95518.1 | 9296 | COG0085 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | RNA polymerase (beta subunit) |
| AL592022_295487 | CAC95519.1 | 9296 | COG0086 | DNA-directed RNA polymerase, beta' subunit/160 kD subunit | RNA polymerase (beta' subunit) |
| AL592022_1229882 | CAC96445.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | |
| AL592022_1838943 | CAC97064.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | |
| AL592022_894912 | CAC96091.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | |
| AL592022_1489127 | CAC96719.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | |
| AL592022_1492503 | CAC96722.1 | 4991 | COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | RNA polymerase sigma factor RpoD |
| AL592022_1859518 | CAC97077.1 | 33815 | COG0583 | Transcriptional regulator | transcription activator of glutamate synthase operon GltC |
| AL592022_514066 | CAC95723.1 | 33815 | COG0583 | Transcriptional regulator | |
| AL592022_459941 | CAC95682.1 | 33815 | COG0583 | Transcriptional regulator | |
| AL592022_2273258 | CAC97478.1 | 33815 | COG0583 | Transcriptional regulator | |
| AL592022_2369364 | CAC97562.1 | 33815 | COG0583 | Transcriptional regulator | |
| AL592022_2661314 | CAC97871.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component response phosphate regulator |
| AL592022_328882 | CAC95548.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | |
| AL592022_1868885 | CAC97087.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | |
| AL592022_2077548 | CAC97292.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | |
| AL592022_2539762 | CAC97743.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | |
| AL592022_2747511 | CAC97954.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | |
| AL592022_2839477 | CAC98052.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | |
| AL592022_1409425 | CAC96645.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component response regulator |
| AL592022_1542280 | CAC96773.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | |
| AL592022_2892024 | CAC98102.1 | 17728 | COG0789 | Predicted transcriptional regulators | |
| AL592022_2767544 | CAC97966.1 | 17728 | COG0789 | Predicted transcriptional regulators | |
| AL592022_846211 | CAC96050.1 | 17728 | COG0789 | Predicted transcriptional regulators | |
| AL592022_835475 | CAC96038.1 | 17728 | COG0789 | Predicted transcriptional regulators | |
| AL592022_1632451 | CAC96853.1 | 17728 | COG0789 | Predicted transcriptional regulators | |
| AL592022_924734 | CAC96126.1 | 4991 | COG1191 | DNA-directed RNA polymerase specialized sigma subunit | RNA polymerase sigma-37 factor (sigma-B) |
| AL592022_1836130 | CAC97063.1 | 4661 | COG1221 | Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain | |
| AL592022_2007937 | CAC97222.1 | 32653 | COG1278 | Cold shock proteins | |
| AL592022_2146391 | CAC97354.1 | 32653 | COG1278 | Cold shock proteins | |
| AL592022_1393801 | CAC96632.1 | 32653 | COG1278 | Cold shock proteins | |
| AL592022_2212183 | CAC97422.1 | 1331 | COG1309 | Transcriptional regulator | |
| AL592022_880224 | CAC96077.1 | 1331 | COG1309 | Transcriptional regulator | |
| AL592022_2680730 | CAC97888.1 | 33966 | COG1316 | Transcriptional regulator | |
| AL592022_1045926 | CAC96256.1 | 33966 | COG1316 | Transcriptional regulator | |
| AL592022_411681 | CAC95633.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | |
| AL592022_2492894 | CAC97692.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | |
| AL592022_393344 | CAC95612.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | |
| AL592022_382547 | CAC95603.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | |
| AL592022_2232441 | CAC97441.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | |
| AL592022_2449671 | CAC97658.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | |
| AL592022_364120 | CAC95584.1 | 6861 | COG1396 | Predicted transcriptional regulators | |
| AL592022_692972 | CAC95895.1 | 6861 | COG1396 | Predicted transcriptional regulators | |
| AL592022_363055 | CAC95583.1 | 6861 | COG1396 | Predicted transcriptional regulators | |
| AL592022_1267399 | CAC96493.1 | 28727 | COG1475 | Predicted transcriptional regulators | |
| AL592022_1740897 | CAC96968.1 | 28727 | COG1475 | Predicted transcriptional regulators | |
| AL592022_2943265 | CAC98147.1 | 436 | COG1475 | Predicted transcriptional regulators | Partition protein ParB homolg |
| AL592022_2946330 | CAC98151.1 | 436 | COG1475 | Predicted transcriptional regulators | |
| AL592022_566225 | CAC95771.1 | 25605 | COG1609 | Transcriptional regulators | |
| AL592022_2256038 | CAC97462.1 | 25605 | COG1609 | Transcriptional regulators | |
| AL592022_2995943 | CAC98199.1 | 25605 | COG1609 | Transcriptional regulators | |
| AL592022_2894028 | CAC98106.1 | 25605 | COG1609 | Transcriptional regulators | |
| AL592022_1843285 | CAC97069.1 | 25605 | COG1609 | Transcriptional regulators | |
| AL592022_2119423 | CAC97332.1 | 25605 | COG1609 | Transcriptional regulators | |
| AL592022_32164 | CAC95263.1 | 25605 | COG1609 | Transcriptional regulators | transcriptional regulator LacI family |
| AL592022_884950 | CAC96083.1 | 25605 | COG1609 | Transcriptional regulators | |
| AL592022_1651043 | CAC96871.1 | 25605 | COG1609 | Transcriptional regulators | catabolite control protein A |
| AL592022_1185406 | CAC96407.1 | 1496 | COG1695 | Predicted transcriptional regulators | |
| AL592022_639252 | CAC95840.1 | 1496 | COG1695 | Predicted transcriptional regulators | |
| AL592022_749269 | CAC95959.1 | 1496 | COG1695 | Predicted transcriptional regulators | |
| AL592022_939317 | CAC96141.1 | 35377 | COG1725 | Predicted transcriptional regulators | |
| AL592022_1841753 | CAC97067.1 | 35377 | COG1725 | Predicted transcriptional regulators | |
| AL592022_767299 | CAC95975.1 | 35377 | COG1725 | Predicted transcriptional regulators | |
| AL592022_2378893 | CAC97570.1 | 35377 | COG1725 | Predicted transcriptional regulators | |
| AL592022_904570 | CAC96101.1 | 10791 | COG1733 | Predicted transcriptional regulators | |
| AL592022_1191255 | CAC96414.1 | 10791 | COG1733 | Predicted transcriptional regulators | |
| AL592022_1915276 | CAC97129.1 | 10791 | COG1733 | Predicted transcriptional regulators | |
| AL592022_2927860 | CAC98134.1 | 12374 | COG1737 | Transcriptional regulators | |
| AL592022_552271 | CAC95759.1 | 12374 | COG1737 | Transcriptional regulators | |
| AL592022_304380 | CAC95524.1 | 35604 | COG1846 | Transcriptional regulators | |
| AL592022_2334924 | CAC97531.1 | 35604 | COG1846 | Transcriptional regulators | |
| AL592022_1373245 | CAC96607.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | |
| AL592022_2926635 | CAC98132.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | |
| AL592022_837611 | CAC96041.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | |
| AL592022_33421 | CAC95264.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | |
| AL592022_791983 | CAC96002.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | |
| AL592022_2948155 | CAC98153.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | |
| AL592022_1552490 | CAC96781.1 | 35488 | COG1959 | Predicted transcriptional regulator | |
| AL592022_478256 | CAC95690.1 | 35488 | COG1959 | Predicted transcriptional regulator | |
| AL592022_669764 | CAC95872.1 | 35488 | COG1959 | Predicted transcriptional regulator | |
| AL592022_982537 | CAC96188.1 | 34181 | COG2188 | Transcriptional regulators | |
| AL592022_1236335 | CAC96452.1 | 34181 | COG2188 | Transcriptional regulators | |
| AL592022_611715 | CAC95816.1 | 34181 | COG2188 | Transcriptional regulators | |
| AL592022_22966 | CAC95252.1 | 34181 | COG2188 | Transcriptional regulators | |
| AL592022_402673 | CAC95623.1 | 34181 | COG2188 | Transcriptional regulators | |
| AL592022_932896 | CAC96133.1 | 34181 | COG2188 | Transcriptional regulators | |
| AL592022_1042653 | CAC96252.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | |
| AL592022_2678303 | CAC97885.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | |
| AL592022_2554369 | CAC97762.1 | 23737 | COG2378 | Predicted transcriptional regulator | |
| AL592022_406952 | CAC95628.1 | 23737 | COG2378 | Predicted transcriptional regulator | |
| AL592022_484770 | CAC95696.1 | 23737 | COG2378 | Predicted transcriptional regulator | |
| AL592022_578649 | CAC95783.1 | 16407 | COG2390 | Transcriptional regulator, contains sigma factor-related N-terminal domain | |
| AL592022_2121247 | CAC97334.1 | 16407 | COG2390 | Transcriptional regulator, contains sigma factor-related N-terminal domain | |
| AL592022_798741 | CAC96010.1 | 4661 | COG3933 | Transcriptional antiterminator | |
| Excluded Genes in listeriainnocua_clip11262 : K |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AL592022_653025 | CAC95855.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | |
| AL592022_641366 | CAC95843.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | |
| AL592022_2270223 | CAC97475.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | |
| AL592022_78505 | CAC95306.1 | 33892 | COG1396 | Predicted transcriptional regulators | |
| AL592022_1245851 | CAC96461.1 | 33892 | COG1396 | Predicted transcriptional regulators | |
| AL592022_2623190 | CAC97834.1 | 33892 | COG1396 | Predicted transcriptional regulators | |
| AL592022_1759363 | CAC96993.1 | 33892 | COG1396 | Predicted transcriptional regulators | |
| AL592022_1249205 | CAC96465.1 | 33892 | COG1396 | Predicted transcriptional regulators | |
| AL592022_2441922 | CAC97649.1 | 33892 | COG1396 | Predicted transcriptional regulators | |
| AL592022_81081 | CAC95313.1 | 28340 | COG3617 | Prophage antirepressor | |
| AL592022_2439816 | CAC97645.1 | 28340 | COG3617 | Prophage antirepressor | |
