| All COGs for lactococcuslactissubsp_il1403 : K |
| Genes (#) | COG | COG description |
| 1 | COG0085 | DNA-directed RNA polymerase, beta subunit/140 kD subunit |
| 1 | COG0086 | DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
| 1 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases |
| 2 | COG0513 | Superfamily II DNA and RNA helicases |
| 1 | COG0557 | Exoribonuclease R |
| 2 | COG0583 | Transcriptional regulator |
| 6 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
| 3 | COG0789 | Predicted transcriptional regulators |
| 2 | COG1278 | Cold shock proteins |
| 3 | COG1309 | Transcriptional regulator |
| 3 | COG1349 | Transcriptional regulators of sugar metabolism |
| 3 | COG1396 | Predicted transcriptional regulators |
| 2 | COG1438 | Arginine repressor |
| 2 | COG1475 | Predicted transcriptional regulators |
| 3 | COG1609 | Transcriptional regulators |
| 2 | COG1695 | Predicted transcriptional regulators |
| 2 | COG1733 | Predicted transcriptional regulators |
| 8 | COG1737 | Transcriptional regulators |
| 3 | COG1846 | Transcriptional regulators |
| 3 | COG1940 | Transcriptional regulator/sugar kinase |
| 2 | COG2188 | Transcriptional regulators |
| 1 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
| Included Genes in lactococcuslactissubsp_il1403 : K |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE005176_1860915 | AAK05898.1 | 9296 | COG0085 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | DNA-directed RNA polymerase beta chain (EC 2.7.7.6) |
| AE005176_1857183 | AAK05897.1 | 9296 | COG0086 | DNA-directed RNA polymerase, beta' subunit/160 kD subunit | DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) |
| AE005176_1884191 | AAK05914.1 | 4421 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | HYPOTHETICAL PROTEIN |
| AE005176_353033 | AAK04448.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| AE005176_415804 | AAK04508.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase |
| AE005176_1226204 | AAK05303.1 | 14164 | COG0557 | Exoribonuclease R | ribonuclease |
| AE005176_380895 | AAK04475.1 | 34776 | COG0583 | Transcriptional regulator | LysR family transcriptional regulator |
| AE005176_377467 | AAK04472.1 | 34776 | COG0583 | Transcriptional regulator | LysR family transcriptional regulator |
| AE005176_1638768 | AAK05692.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component system regulator |
| AE005176_1726969 | AAK05773.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component system regulator |
| AE005176_1804856 | AAK05845.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component system regulator |
| AE005176_1030421 | AAK05100.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component system regulator |
| AE005176_402989 | AAK04495.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component system regulator |
| AE005176_1458173 | AAK05533.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | two-component system regulator |
| AE005176_2052690 | AAK06075.1 | 17728 | COG0789 | Predicted transcriptional regulators | transcriptional regulator |
| AE005176_1946839 | AAK05975.1 | 17728 | COG0789 | Predicted transcriptional regulators | transcriptional regulator |
| AE005176_1507815 | AAK05577.1 | 17728 | COG0789 | Predicted transcriptional regulators | transcriptional regulator |
| AE005176_517114 | AAK04627.1 | 32653 | COG1278 | Cold shock proteins | cold shock protein D |
| AE005176_172501 | AAK04266.1 | 32653 | COG1278 | Cold shock proteins | cold shock protein E |
| AE005176_2325385 | AAK06337.1 | 28073 | COG1309 | Transcriptional regulator | transcriptional regulator |
| AE005176_245056 | AAK04345.1 | 28073 | COG1309 | Transcriptional regulator | HYPOTHETICAL PROTEIN |
| AE005176_903327 | AAK04979.1 | 28073 | COG1309 | Transcriptional regulator | transcriptional regulator |
| AE005176_1331842 | AAK05395.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | transcriptional regulator |
| AE005176_983589 | AAK05055.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | lactose transport regulator |
| AE005176_796549 | AAK04887.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | transcriptional regulator |
| AE005176_935545 | AAK05009.1 | 30705 | COG1396 | Predicted transcriptional regulators | transcriptional regulator |
| AE005176_1469252 | AAK05545.1 | 30705 | COG1396 | Predicted transcriptional regulators | transcriptional regulator |
| AE005176_1617891 | AAK05674.1 | 30705 | COG1396 | Predicted transcriptional regulators | transcriptional regulator |
| AE005176_882501 | AAK04957.1 | 6340 | COG1438 | Arginine repressor | transcriptional regulator |
| AE005176_2117603 | AAK06137.1 | 6340 | COG1438 | Arginine repressor | arginine catabolic regulator |
| AE005176_1152577 | AAK05236.1 | 33144 | COG1475 | Predicted transcriptional regulators | HYPOTHETICAL PROTEIN |
| AE005176_1469635 | AAK05546.1 | 33144 | COG1475 | Predicted transcriptional regulators | HYPOTHETICAL PROTEIN |
| AE005176_1727815 | AAK05774.1 | 25605 | COG1609 | Transcriptional regulators | transcriptional regulator |
| AE005176_1687322 | AAK05738.1 | 25605 | COG1609 | Transcriptional regulators | ribose operon repressor |
| AE005176_1695930 | AAK05746.1 | 25605 | COG1609 | Transcriptional regulators | catabolite control protein A |
| AE005176_2144821 | AAK06157.1 | 1496 | COG1695 | Predicted transcriptional regulators | HYPOTHETICAL PROTEIN |
| AE005176_308509 | AAK04407.1 | 1496 | COG1695 | Predicted transcriptional regulators | HIPOTHETICAL PROTEIN |
| AE005176_2247500 | AAK06269.1 | 10791 | COG1733 | Predicted transcriptional regulators | HYPOTHETICAL PROTEIN |
| AE005176_333567 | AAK04432.1 | 10791 | COG1733 | Predicted transcriptional regulators | HYPOTHETICAL PROTEIN |
| AE005176_419728 | AAK04513.1 | 12374 | COG1737 | Transcriptional regulators | transcriptional regulator |
| AE005176_417888 | AAK04510.1 | 12374 | COG1737 | Transcriptional regulators | transcriptional regulator |
| AE005176_830200 | AAK04915.1 | 12374 | COG1737 | Transcriptional regulators | transcription regulator |
| AE005176_547458 | AAK04652.1 | 26721 | COG1737 | Transcriptional regulators | transcription regulator |
| AE005176_2064540 | AAK06083.1 | 26721 | COG1737 | Transcriptional regulators | transcription regulator |
| AE005176_1147533 | AAK05231.1 | 8467 | COG1737 | Transcriptional regulators | transcription regulator |
| AE005176_2271521 | AAK06284.1 | 8467 | COG1737 | Transcriptional regulators | transcription regulator |
| AE005176_1192577 | AAK05274.1 | 8467 | COG1737 | Transcriptional regulators | transcriptional regulator |
| AE005176_1511212 | AAK05580.1 | 23620 | COG1846 | Transcriptional regulators | transcriptional regulator |
| AE005176_1582257 | AAK05638.1 | 23620 | COG1846 | Transcriptional regulators | transcriptional regulator |
| AE005176_1502314 | AAK05570.1 | 26277 | COG1846 | Transcriptional regulators | transcriptional regulator |
| AE005176_1518948 | AAK05586.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | sugar kinase |
| AE005176_1517970 | AAK05585.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | fructokinase (EC 2.7.1.4) |
| AE005176_2100698 | AAK06121.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | glucose kinase (EC 2.7.1.2) |
| AE005176_1460974 | AAK05535.1 | 34181 | COG2188 | Transcriptional regulators | GntR family transcriptional regulator |
| AE005176_436511 | AAK04523.1 | 34181 | COG2188 | Transcriptional regulators | GntR family transcriptional regulator |
| AE005176_912508 | AAK04989.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | two-component system regulator |
| Excluded Genes in lactococcuslactissubsp_il1403 : K |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE005176_2015846 | AAK06034.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | prophage ps3 protein 05 |
| AE005176_1109208 | AAK05199.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | HYPOTHETICAL PROTEIN |
| AE005176_444997 | AAK04532.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | HYPOTHETICAL PROTEIN |
| AE005176_517855 | AAK04628.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | transcriptional regulator |
| AE005176_100572 | AAK04196.1 | 34290 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | acetyl transferase |
| AE005176_1038925 | AAK05109.1 | 15935 | COG1396 | Predicted transcriptional regulators | prophage pi2 protein 04 HYPOTHETICAL PROTEIN |
| AE005176_1302355 | AAK05369.1 | 15935 | COG1396 | Predicted transcriptional regulators | transcriptional regulator |
| AE005176_1453713 | AAK05528.1 | 15935 | COG1396 | Predicted transcriptional regulators | prophage pi3 protein 57, cI-like repressor |
| AE005176_2296597 | AAK06311.1 | 33892 | COG1396 | Predicted transcriptional regulators | transcription regulator |
| AE005176_505482 | AAK04605.1 | 33892 | COG1396 | Predicted transcriptional regulators | prophage ps2 protein 05, transcriptional repressor |
| AE005176_1452584 | AAK05526.1 | 4155 | COG3561 | Phage anti-repressor protein | prophage pi3 protein 55, antirepressor |
