| Included Genes in clostridiumacetobutylicum_atcc824 : K |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE001437_3278841 | AAK81081.1 | 9296 | COG0085 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | DNA-dependent RNA polymerase beta subunit |
| AE001437_3275271 | AAK81080.1 | 9296 | COG0086 | DNA-directed RNA polymerase, beta' subunit/160 kD subunit | DNA-dependent RNA polymerase beta' subunit |
| AE001437_2598885 | AAK80445.1 | 14242 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | Predicted acetyltransferase |
| AE001437_182984 | AAK78144.1 | 14242 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | Predicted acetyltransferase |
| AE001437_2881274 | AAK80697.1 | 4594 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | Predicted acetyltransferase |
| AE001437_1154993 | AAK78983.1 | 4594 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | Predicted acetyltransferase |
| AE001437_2582421 | AAK80422.1 | 6784 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | Predicted acetyltransferase |
| AE001437_3407711 | AAK81190.1 | 6784 | COG0454 | Histone acetyltransferase HPA2 and related acetyltransferases | Predicted acetyltransferase |
| AE001437_3149865 | AAK80951.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis ortholog |
| AE001437_2877184 | AAK80694.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP dependent RNA helicase DeaD, superfamily II |
| AE001437_906689 | AAK78760.1 | 33241 | COG0513 | Superfamily II DNA and RNA helicases | ATP-dependent RNA helicase, superfamily II |
| AE001437_3133673 | AAK80937.1 | 5606 | COG0553 | Superfamily II DNA/RNA helicases, SNF2 family | Superfamily II DNA/RNA helicase, SNF2 family |
| AE001437_3469203 | AAK81236.1 | 5606 | COG0553 | Superfamily II DNA/RNA helicases, SNF2 family | Superfamily II DNA/RNA helicases, SNF2 family |
| AE001437_3631171 | AAK81371.1 | 5606 | COG0553 | Superfamily II DNA/RNA helicases, SNF2 family | DNA/RNA helicase, SNF2 |
| AE001437_1443616 | AAK79271.1 | 4991 | COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | RNA polymerase sigma factor RPOD |
| AE001437_3538619 | AAK81292.1 | 33815 | COG0583 | Transcriptional regulator | Transcriptional regulator, LysR family |
| AE001437_3539488 | AAK81293.1 | 33815 | COG0583 | Transcriptional regulator | Transcriptional regulator, LysR family |
| AE001437_3522688 | AAK81281.1 | 33815 | COG0583 | Transcriptional regulator | Transcriptional regulator, LysR family |
| AE001437_2503193 | AAK80349.1 | 33815 | COG0583 | Transcriptional regulator | Transcriptional regulator, LysR family |
| AE001437_865592 | AAK78721.1 | 33815 | COG0583 | Transcriptional regulator | Transcriptional regulator, LysR family |
| AE001437_1199004 | AAK79022.1 | 33815 | COG0583 | Transcriptional regulator | Transcriptional regulator, LysR family |
| AE001437_33214 | AAK78010.1 | 33815 | COG0583 | Transcriptional regulator | Transcriptional regulator, LysR family |
| AE001437_101128 | AAK78078.1 | 33815 | COG0583 | Transcriptional regulator | Transcriptional regulators, LysR family |
| AE001437_328308 | AAK78270.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY domain, HTH domain) |
| AE001437_433681 | AAK78351.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like domain and HTH domain) |
| AE001437_517926 | AAK78430.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like and HTH domains) |
| AE001437_961417 | AAK78806.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator |
| AE001437_1694562 | AAK79519.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like receiver domain and HTH DNA-binding domain) |
| AE001437_3369337 | AAK81156.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) |
| AE001437_3865664 | AAK81585.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) |
| AE001437_652910 | AAK78543.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (REC, HTH domains) |
| AE001437_2552563 | AAK80389.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like domain and HTH-type DNA-binding domain) |
| AE001437_3878027 | AAK81598.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | KDP operon transcriptional regulatory protein KdpE (CheY-like receiver domain and HTH-type DNA-binding domain) |
| AE001437_3715608 | AAK81443.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) |
| AE001437_2891279 | AAK80704.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY receiver domain and HTH-type DNA-binding domain) |
| AE001437_2860499 | AAK80681.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like receiver domain and HTH-type DNA-binding) |
| AE001437_1658951 | AAK79483.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like receiver domain and HTH DNA-binding domain) |
| AE001437_990196 | AAK78836.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Two-component response regulator |
| AE001437_248980 | AAK78205.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like receiver domain and HTH DNA-binding domain) |
| AE001437_375646 | AAK78302.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like domain, HTH domain) |
| AE001437_604412 | AAK78503.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like and HTH domains) |
| AE001437_758945 | AAK78630.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like receiver domain and HTH DNA binding domain) |
| AE001437_1650171 | AAK79473.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like receiver domain and a HTH) |
| AE001437_1850364 | AAK79666.1 | 27701 | COG0745 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | Response regulator (CheY-like receiver domain and DNA-binding HTH domain) |
| AE001437_2081513 | AAK79926.1 | 6876 | COG0782 | Transcription elongation factor | Transcription elongation factor GreA |
| AE001437_3343482 | AAK81134.1 | 6876 | COG0782 | Transcription elongation factor | Transcription elongation factor, greA |
| AE001437_2546049 | AAK80384.1 | 6876 | COG0782 | Transcription elongation factor | Transcription elongation factor, greA |
| AE001437_3702365 | AAK81433.1 | 17728 | COG0789 | Predicted transcriptional regulators | Transcriptional regulator, MerR family |
| AE001437_888738 | AAK78742.1 | 17728 | COG0789 | Predicted transcriptional regulators | Predicted transcriptional regulator (MerR family) |
| AE001437_533100 | AAK78441.1 | 17728 | COG0789 | Predicted transcriptional regulators | Mercuric resistance operon regulatory protein, MerR family |
| AE001437_2399636 | AAK80253.1 | 614 | COG1167 | Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs | Transcriptional regulator of MocR family (DNA-binding HTH domain and aminotransferase domain) |
| AE001437_3851618 | AAK81573.1 | 614 | COG1167 | Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs | Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) |
| AE001437_1847610 | AAK79662.1 | 4991 | COG1191 | DNA-directed RNA polymerase specialized sigma subunit | Specialized DNA-dependent RNA polymerase sigma subunit |
| AE001437_2409753 | AAK80262.1 | 4991 | COG1191 | DNA-directed RNA polymerase specialized sigma subunit | Sporulation-specific sigma factor F |
| AE001437_1846829 | AAK79661.1 | 4991 | COG1191 | DNA-directed RNA polymerase specialized sigma subunit | DNA-dependent RNA polymerase sigma subunit |
| AE001437_1839816 | AAK79655.1 | 4991 | COG1191 | DNA-directed RNA polymerase specialized sigma subunit | DNA-dependent RNA polymerase sigma subunit |
| AE001437_2235085 | AAK80101.1 | 4991 | COG1191 | DNA-directed RNA polymerase specialized sigma subunit | Sigma factor of SigD/WhiG family |
| AE001437_3127359 | AAK80931.1 | 32653 | COG1278 | Cold shock proteins | Cold shock protein |
| AE001437_933945 | AAK78783.1 | 32653 | COG1278 | Cold shock proteins | Cold shock protein |
| AE001437_838789 | AAK78700.1 | 14424 | COG1309 | Transcriptional regulator | Transcriptional regulator, AcrR family |
| AE001437_838031 | AAK78699.1 | 14424 | COG1309 | Transcriptional regulator | Transcriptional regulator, AcrR family |
| AE001437_3680458 | AAK81407.1 | 29199 | COG1309 | Transcriptional regulator | Transcriptional regulator, AcrR family |
| AE001437_3716587 | AAK81444.1 | 29199 | COG1309 | Transcriptional regulator | Transcriptional regulators, AcrR family |
| AE001437_3212042 | AAK81003.1 | 33966 | COG1316 | Transcriptional regulator | Transcriptional regulator, LytR family |
| AE001437_3195096 | AAK80986.1 | 33966 | COG1316 | Transcriptional regulator | Transcriptional regulator, LytR family |
| AE001437_124089 | AAK78098.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | Transcriptional regulator of sugar metabolism |
| AE001437_262569 | AAK78212.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | Transcripcional regulator of sugar metabolism |
| AE001437_1574943 | AAK79398.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | Transcriptional regulators of sugar metabolism (deoR family) |
| AE001437_3100856 | AAK80908.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | Lactose phosphotransferase system repressor lacR |
| AE001437_3088430 | AAK80897.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | Lactose phosphotransferase system repressor lacR |
| AE001437_3084510 | AAK80892.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | Lactose phosphotransferase system repressor lacR |
| AE001437_1547695 | AAK79372.1 | 34320 | COG1349 | Transcriptional regulators of sugar metabolism | Transcriptional regulator of sugar metabolism (deoR family) |
| AE001437_3846471 | AAK81567.1 | 24524 | COG1396 | Predicted transcriptional regulators | CRO repressor-like DNA-binding protein |
| AE001437_3840211 | AAK81562.1 | 24524 | COG1396 | Predicted transcriptional regulators | CRO repressor-like DNA-binding protein |
| AE001437_1193798 | AAK79019.1 | 26377 | COG1396 | Predicted transcriptional regulators | Xre family DNA-binding domain and TPR-repeat containing protein |
| AE001437_210917 | AAK78168.1 | 26377 | COG1396 | Predicted transcriptional regulators | Xre family DNA-binding domain and TPR-repeat-containing protein |
| AE001437_1358390 | AAK79186.1 | 26377 | COG1396 | Predicted transcriptional regulators | Xre family DNA-binding domain and TPR-repeat containing protein |
| AE001437_3931896 | AAK81649.1 | 436 | COG1475 | Predicted transcriptional regulators | Stage 0 sporulation J, ParB family of DNA-binding proteins |
| AE001437_3933670 | AAK81651.1 | 436 | COG1475 | Predicted transcriptional regulators | Stage 0 sporulation J, ParB family of DNA-binding proteins |
| AE001437_3495959 | AAK81256.1 | 1794 | COG1476 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_2601592 | AAK80449.1 | 1794 | COG1476 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_2585196 | AAK80427.1 | 1794 | COG1476 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_1613206 | AAK79431.1 | 1794 | COG1476 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_1616961 | AAK79435.1 | 33976 | COG1522 | Transcriptional regulators | Transcriptional regulator, Lrp family |
| AE001437_1125412 | AAK78953.1 | 33976 | COG1522 | Transcriptional regulators | Transcriptional regulator, Lrp family |
| AE001437_3096016 | AAK80904.1 | 25605 | COG1609 | Transcriptional regulators | Transcriptional regulators of the LacI family |
| AE001437_3183706 | AAK80977.1 | 25605 | COG1609 | Transcriptional regulators | Catabolite control protein, LacI family transcriptional regulator |
| AE001437_985886 | AAK78832.1 | 25605 | COG1609 | Transcriptional regulators | Transcriptional regulator, LacI family (probably maltose operon transcriptional repressor) |
| AE001437_457385 | AAK78373.1 | 25605 | COG1609 | Transcriptional regulators | KDG operon repressor (gene kdgR), LacI family |
| AE001437_419727 | AAK78340.1 | 25605 | COG1609 | Transcriptional regulators | Transcriptional regulator, LacI family (HTH lacI domain), B.subtilis degA ortholog |
| AE001437_800592 | AAK78670.1 | 25605 | COG1609 | Transcriptional regulators | Transcriptional regulator of the LacI family |
| AE001437_691644 | AAK78577.1 | 35377 | COG1725 | Predicted transcriptional regulators | Transcriptional regulator, GntR family |
| AE001437_297523 | AAK78246.1 | 35377 | COG1725 | Predicted transcriptional regulators | Transcriptional regulator, GntR family |
| AE001437_2671095 | AAK80517.1 | 10791 | COG1733 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_3066542 | AAK80876.1 | 10791 | COG1733 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_221433 | AAK78177.1 | 10791 | COG1733 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_3686027 | AAK81413.1 | 10791 | COG1733 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_3511107 | AAK81270.1 | 10791 | COG1733 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_3583360 | AAK81329.1 | 10791 | COG1733 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_3691912 | AAK81422.1 | 10791 | COG1733 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_3686456 | AAK81414.1 | 10791 | COG1733 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_1630694 | AAK79451.1 | 10791 | COG1733 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_977746 | AAK78825.1 | 10791 | COG1733 | Predicted transcriptional regulators | Predicted transcriptional regulator |
| AE001437_441794 | AAK78359.1 | 32965 | COG1802 | Transcriptional regulators | Transcriptional regulator, GntR family |
| AE001437_185565 | AAK78146.1 | 23757 | COG1846 | Transcriptional regulators | Transcriptional regulator MarR/EmrR family |
| AE001437_646645 | AAK78538.1 | 23757 | COG1846 | Transcriptional regulators | Transcriptional regulator, MarR/EmrR family |
| AE001437_1665236 | AAK79490.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | Fructokinase |
| AE001437_2717044 | AAK80560.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | Transcriptional regulators of NagC/XylR family |
| AE001437_1254775 | AAK79060.1 | 22273 | COG1940 | Transcriptional regulator/sugar kinase | Transcriptional regulators of NagC/XylR family |
| AE001437_3722799 | AAK81451.1 | 35488 | COG1959 | Predicted transcriptional regulator | Uncharacterized conserved protein, YjeB/RRF2 family |
| AE001437_2330121 | AAK80193.1 | 35488 | COG1959 | Predicted transcriptional regulator | Uncharacterized conserved protein of YjeB/RRF2 family |
| AE001437_1824704 | AAK79641.1 | 35488 | COG1959 | Predicted transcriptional regulator | Predicted transcriptional regulator (HTH winged helix type) |
| AE001437_125487 | AAK78100.1 | 35488 | COG1959 | Predicted transcriptional regulator | Uncharacterized protein, Yje/RRF2 family |
| AE001437_3847785 | AAK81569.1 | 2371 | COG2002 | Regulators of stationary/sporulation gene expression | Transition state regulatory protein AbrB |
| AE001437_3849693 | AAK81571.1 | 2371 | COG2002 | Regulators of stationary/sporulation gene expression | Possible stage V sporulation protein T, transcriptional regulator AbrB homolog |
| AE001437_363819 | AAK78291.1 | 2371 | COG2002 | Regulators of stationary/sporulation gene expression | Regulators of stationary/sporulation gene expression, abrB B.subtilis ortholog |
| AE001437_2062295 | AAK79903.1 | 2371 | COG2002 | Regulators of stationary/sporulation gene expression | Transcription regulator AbrB |
| AE001437_3804011 | AAK81526.1 | 32965 | COG2186 | Transcriptional regulators | Transcriptional regulator, FadR family |
| AE001437_2653807 | AAK80497.1 | 32965 | COG2186 | Transcriptional regulators | Transcriptional regulator, FadR family |
| AE001437_3697563 | AAK81428.1 | 34181 | COG2188 | Transcriptional regulators | Transcriptional regulator, fadR family |
| AE001437_214335 | AAK78171.1 | 34181 | COG2188 | Transcriptional regulators | Similar to transcriptional regulator, GntR family |
| AE001437_1604046 | AAK79423.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | Two-component system regulator (CheY domain and HTH-like DNA-binding domain) |
| AE001437_2353179 | AAK80211.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) |
| AE001437_3616468 | AAK81359.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) |
| AE001437_3070820 | AAK80881.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) |
| AE001437_994813 | AAK78841.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | Two-component response regulator |
| AE001437_271300 | AAK78221.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | Response regulator (CheY-like recever domain and HTH DNA-binding domain) |
| AE001437_197025 | AAK78156.1 | 27701 | COG2197 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | Response regulator, CheY-like receiver domain and HTH DNA-binding domain |
| AE001437_2946629 | AAK80762.1 | 10717 | COG2207 | AraC-type DNA-binding domain-containing proteins | AraC-type DNA-binding domain-containing protein, transcriptional regulator |
| AE001437_2711293 | AAK80555.1 | 10717 | COG2207 | AraC-type DNA-binding domain-containing proteins | Trancriptional regulator of AraC family |
| AE001437_1472745 | AAK79301.1 | 10717 | COG2207 | AraC-type DNA-binding domain-containing proteins | AraC-type sugar metabolism regulator |
| AE001437_88953 | AAK78066.1 | 33796 | COG3279 | Response regulator of the LytR/AlgR family | Accessory gene regulator protein A |
| AE001437_1814010 | AAK79636.1 | 33796 | COG3279 | Response regulator of the LytR/AlgR family | Response regulator (CheY-like receiver domain and DNA-binding HTH domain) |
| AE001437_1724906 | AAK79548.1 | 33796 | COG3279 | Response regulator of the LytR/AlgR family | Response regulator (CheY-like receiver domain and HTH DNA-binding domain) |
| AE001437_658307 | AAK78548.1 | 16122 | COG3711 | Transcriptional antiterminator | SACPA operon antiterminator (sacT) |
| AE001437_488038 | AAK78402.1 | 16122 | COG3711 | Transcriptional antiterminator | Transcriptional antiterminator licT |
| AE001437_1500207 | AAK79323.1 | 16122 | COG3711 | Transcriptional antiterminator | Transcriptional antiterminator (BglG family) |
| AE001437_1550310 | AAK79374.1 | 16122 | COG3711 | Transcriptional antiterminator | Transcriptional antiterminator (BglG family) |
| AE001437_529651 | AAK78439.1 | 31616 | COG3829 | Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains | NtrC family transcriptional regulator (PAS and AAA domains) |
