| All COGs for salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : H |
| Genes (#) | COG | COG description |
| 1 | COG0001 | Glutamate-1-semialdehyde aminotransferase |
| 4 | COG0028 | Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
| 1 | COG0029 | Aspartate oxidase |
| 2 | COG0043 | 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
| 1 | COG0095 | Lipoate-protein ligase A |
| 1 | COG0111 | Phosphoglycerate dehydrogenase and related dehydrogenases |
| 2 | COG0115 | Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
| 2 | COG0132 | Dethiobiotin synthetase |
| 2 | COG0142 | Geranylgeranyl pyrophosphate synthase |
| 2 | COG0147 | Anthranilate/para-aminobenzoate synthases component I |
| 2 | COG0156 | 7-keto-8-aminopelargonate synthetase and related enzymes |
| 1 | COG0161 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
| 2 | COG0163 | 3-polyprenyl-4-hydroxybenzoate decarboxylase |
| 1 | COG0447 | Dihydroxynaphthoic acid synthase |
| 2 | COG0476 | Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 |
| 1 | COG0512 | Anthranilate/para-aminobenzoate synthases component II |
| 2 | COG0521 | Molybdopterin biosynthesis enzymes |
| 3 | COG0654 | 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
| 2 | COG1052 | Lactate dehydrogenase and related dehydrogenases |
| 3 | COG1120 | ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components |
| 1 | COG1648 | Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) |
| 4 | COG1767 | Triphosphoribosyl-dephospho-CoA synthetase |
| 2 | COG1995 | Pyridoxal phosphate biosynthesis protein |
| 2 | COG2240 | Pyridoxal/pyridoxine/pyridoxamine kinase |
| 1 | COG2875 | Precorrin-4 methylase |
| 2 | COG3697 | Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) |
| 1 | COG3840 | ABC-type thiamine transport system, ATPase component |
| 1 | COG4138 | ABC-type cobalamin transport system, ATPase component |
| 1 | COG4139 | ABC-type cobalamin transport system, permease component |
| Included Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : H |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE006468_237211 | AAL19166.1 | 15723 | COG0001 | Glutamate-1-semialdehyde aminotransferase | glutamate-1-semialdehyde aminotransferase |
| AE006468_1010107 | AAL19871.1 | 19738 | COG0028 | Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] | pyruvate dehydrogenase/oxidase FAD and thiamine PPi cofactors, cytoplasmic in absence of cofactors |
| AE006468_135898 | AAL19080.1 | 19738 | COG0028 | Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] | valine sensitive acetolactate synthase III, large subunit |
| AE006468_3995917 | AAL22654.1 | 19738 | COG0028 | Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] | acetolactate synthase I, large subunit |
| AE006468_4108973 | AAL22751.1 | 19738 | COG0028 | Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] | acetolactate synthase II, large subunit |
| AE006468_2780428 | AAL21535.1 | 8352 | COG0029 | Aspartate oxidase | quinolinate synthetase, B protein |
| AE006468_4183598 | AAL22822.1 | 15772 | COG0043 | 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases | putative oxidoreductase |
| AE006468_3063775 | AAL21802.1 | 15772 | COG0043 | 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases | putative 3-polyprenyl-4-hydroxybenzoate decarboxylase |
| AE006468_4831413 | AAL23391.1 | 83 | COG0095 | Lipoate-protein ligase A | lipoate-protein ligase A |
| AE006468_1225066 | AAL20065.1 | 21404 | COG0111 | Phosphoglycerate dehydrogenase and related dehydrogenases | putative oxidoreductase |
| AE006468_4110897 | AAL22753.1 | 32473 | COG0115 | Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase | branched-chain amino-acid aminotransferase |
| AE006468_1281800 | AAL20127.1 | 32473 | COG0115 | Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase | 4-amino-4-deoxychorismate lyase |
| AE006468_863096 | AAL19734.1 | 29681 | COG0132 | Dethiobiotin synthetase | dethiobiotin synthetase |
| AE006468_1566447 | AAL20408.1 | 29681 | COG0132 | Dethiobiotin synthetase | putative dethiobiotin synthase |
| AE006468_3473347 | AAL22174.1 | 35669 | COG0142 | Geranylgeranyl pyrophosphate synthase | octaprenyl diphosphate synthase |
| AE006468_476516 | AAL19377.1 | 35669 | COG0142 | Geranylgeranyl pyrophosphate synthase | geranyltranstransferase (farnesyldiphosphate synthase) |
| AE006468_1818550 | AAL20641.1 | 31450 | COG0147 | Anthranilate/para-aminobenzoate synthases component I | anthranilate synthase, component I |
| AE006468_1921169 | AAL20739.1 | 31450 | COG0147 | Anthranilate/para-aminobenzoate synthases component I | p-aminobenzoate synthetase, component I |
| AE006468_3903917 | AAL22568.1 | 4760 | COG0156 | 7-keto-8-aminopelargonate synthetase and related enzymes | 2-amino-3-ketobutyrate CoA ligase |
| AE006468_861207 | AAL19732.1 | 4760 | COG0156 | 7-keto-8-aminopelargonate synthetase and related enzymes | 7-keto-8-aminopelargonic acid synthetase |
| AE006468_858794 | AAL19730.1 | 15723 | COG0161 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | 7,8-diaminopelargonic acid synthetase |
| AE006468_2466582 | AAL21257.1 | 4126 | COG0163 | 3-polyprenyl-4-hydroxybenzoate decarboxylase | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
| AE006468_3063182 | AAL21801.1 | 4126 | COG0163 | 3-polyprenyl-4-hydroxybenzoate decarboxylase | putative flavoprotein |
| AE006468_2413999 | AAL21208.1 | 14399 | COG0447 | Dihydroxynaphthoic acid synthase | dihydroxynaphtoic acid synthetase |
| AE006468_914962 | AAL19781.1 | 11703 | COG0476 | Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 | molybdopterin biosynthesis |
| AE006468_4379105 | AAL22990.1 | 11703 | COG0476 | Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 | thiamin biosynthesis protein, thiazole moiety |
| AE006468_3619759 | AAL22331.1 | 648 | COG0512 | Anthranilate/para-aminobenzoate synthases component II | p-aminobenzoate synthetase component II |
| AE006468_871649 | AAL19740.1 | 12249 | COG0521 | Molybdopterin biosynthesis enzymes | molybdopterin biosynthesis, protein B |
| AE006468_8729 | AAL18972.1 | 12249 | COG0521 | Molybdopterin biosynthesis enzymes | putative molybdochetalase |
| AE006468_3217137 | AAL21931.1 | 7048 | COG0654 | 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases | putative monooxygenase |
| AE006468_736055 | AAL19622.1 | 7048 | COG0654 | 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases | putative monooxygenase |
| AE006468_3218465 | AAL21932.1 | 7048 | COG0654 | 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases | 2-octaprenyl-6-methoxyphynol hydroxylase |
| AE006468_3833687 | AAL22506.1 | 21404 | COG1052 | Lactate dehydrogenase and related dehydrogenases | 2-keto-D-gluconate reductase |
| AE006468_1740029 | AAL20565.1 | 21404 | COG1052 | Lactate dehydrogenase and related dehydrogenases | NAD-dependent fermentative D-lactate dehydrogenase |
| AE006468_650785 | AAL19541.1 | 35629 | COG1120 | ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components | enterobactin transporter |
| AE006468_225976 | AAL19156.1 | 35629 | COG1120 | ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components | hydroxymate-dependent iron transport |
| AE006468_835496 | AAL19709.1 | 35629 | COG1120 | ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components | putative ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component |
| AE006468_3627468 | AAL22339.1 | 7480 | COG1648 | Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) | siroheme synthase |
| AE006468_833339 | AAL19707.1 | 26313 | COG1767 | Triphosphoribosyl-dephospho-CoA synthetase | putative cytoplasmic protein |
| AE006468_3517981 | AAL22219.1 | 26313 | COG1767 | Triphosphoribosyl-dephospho-CoA synthetase | putative inner membrane protein |
| AE006468_682406 | AAL19570.1 | 5797 | COG1767 | Triphosphoribosyl-dephospho-CoA synthetase | putative modifier of citrate lyase protein |
| AE006468_72929 | AAL19027.1 | 5797 | COG1767 | Triphosphoribosyl-dephospho-CoA synthetase | putative modifier of citrate lyase protein |
| AE006468_103481 | AAL19055.1 | 4916 | COG1995 | Pyridoxal phosphate biosynthesis protein | NAD-dependent dehydrogenase/carboxylase |
| AE006468_192411 | AAL19127.1 | 4916 | COG1995 | Pyridoxal phosphate biosynthesis protein | pyridoxine phosphate biosynthetic protein |
| AE006468_1524821 | AAL20372.1 | 12037 | COG2240 | Pyridoxal/pyridoxine/pyridoxamine kinase | pyridoxal kinase 2 |
| AE006468_2547554 | AAL21329.1 | 12037 | COG2240 | Pyridoxal/pyridoxine/pyridoxamine kinase | pyridoxal-pyridoxamine kinase |
| AE006468_2107760 | AAL20933.1 | 7480 | COG2875 | Precorrin-4 methylase | synthesis of vitamin B12 adenosyl cobalamide precursor |
| AE006468_683274 | AAL19571.1 | 18870 | COG3697 | Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) | putative cytoplasmic protein |
| AE006468_72400 | AAL19026.1 | 18870 | COG3697 | Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) | putative cytoplasmic protein |
| AE006468_123410 | AAL19070.1 | 35629 | COG3840 | ABC-type thiamine transport system, ATPase component | putative ABC-transport protein |
| AE006468_1421194 | AAL20267.1 | 35629 | COG4138 | ABC-type cobalamin transport system, ATPase component | vitamin B12 transport protein |
| AE006468_1419571 | AAL20265.1 | 10083 | COG4139 | ABC-type cobalamin transport system, permease component | vitamin B12 transport protein |
| Excluded Genes in salmonellatyphimuriumlt2_lt2sgsc1412atcc700720 : H |
| gene_id | protein_id | gene_family | cog | cog_description | product |
| AE006468_4348110 | AAL22968.1 | 10376 | COG4206 | Outer membrane cobalamin receptor protein | outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23 |
