All COGs for vibriocholerae_n16961_o1 : E
Genes (#)COGCOG description
3COG0028Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
2COG0031Cysteine synthase
1COG0067Glutamate synthase domain 1
1COG0069Glutamate synthase domain 2
1COG0078Ornithine carbamoyltransferase
1COG0106Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
1COG0107Imidazoleglycerol-phosphate synthase
2COG0111Phosphoglycerate dehydrogenase and related dehydrogenases
2COG0112Glycine/serine hydroxymethyltransferase
2COG0115Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
1COG0118Glutamine amidotransferase
2COG0129Dihydroxyacid dehydratase/phosphogluconate dehydratase
2COG0136Aspartate-semialdehyde dehydrogenase
2COG0147Anthranilate/para-aminobenzoate synthases component I
3COG01604-aminobutyrate aminotransferase and related aminotransferases
1COG0241Histidinol phosphatase and related phosphatases
2COG0260Leucyl aminopeptidase
2COG0329Dihydrodipicolinate synthase/N-acetylneuraminate lyase
2COG0347Nitrogen regulatory protein PII
2COG0405Gamma-glutamyltransferase
3COG0444ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
2COG0460Homoserine dehydrogenase
5COG0477Permeases of the major facilitator superfamily
2COG0493NADPH-dependent glutamate synthase beta chain and related oxidoreductases
2COG0512Anthranilate/para-aminobenzoate synthases component II
2COG0520Selenocysteine lyase
2COG0527Aspartokinases
3COG0531Amino acid transporters
6COG0601ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
2COG0624Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
2COG0626Cystathionine beta-lyases/cystathionine gamma-synthases
1COG0686Alanine dehydrogenase
3COG0687Spermidine/putrescine-binding periplasmic protein
1COG0703Shikimate kinase
2COG07223-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
2COG0747ABC-type dipeptide transport system, periplasmic component
7COG0765ABC-type amino acid transport system, permease component
4COG0814Amino acid permeases
4COG0834ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
1COG1027Aspartate ammonia-lyase
3COG1045Serine acetyltransferase
1COG1063Threonine dehydrogenase and related Zn-dependent dehydrogenases
1COG1104Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes
3COG1115Na+/alanine symporter
3COG1124ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
5COG1126ABC-type polar amino acid transport system, ATPase component
5COG1173ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
1COG1177ABC-type spermidine/putrescine transport system, permease component II
8COG1280Putative threonine efflux protein
2COG1448Aspartate/tyrosine/aromatic aminotransferase
2COG1760L-serine deaminase
2COG1982Arginine/lysine/ornithine decarboxylases
2COG2610H+/gluconate symporter and related permeases
1COG2986Histidine ammonia-lyase
1COG3283Transcriptional regulator of aromatic amino acids metabolism

Included Genes in vibriocholerae_n16961_o1 : E
gene_idprotein_idgene_familycogcog_descriptionproduct
AE003852_1700984AAF94744.119738COG0028Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]acetolactate synthase
AE003852_2661957AAF95625.119738COG0028Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]acetolactate synthase III, large subunit
AE003852_27889AAF93209.119738COG0028Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]acetolactate synthase II, large subunit
AE003852_568688AAF93705.113709COG0031Cysteine synthasecysteine synthase B
AE003852_1032170AAF94130.113709COG0031Cysteine synthasecysteine synthase A
AE003852_2537655AAF95519.17964COG0067Glutamate synthase domain 1glutamate synthase, large subunit
AE003852_2531065AAF95516.17964COG0069Glutamate synthase domain 2glutamate synthase, large subunit
AE003852_2698345AAF95650.132264COG0078Ornithine carbamoyltransferaseornithine carbamoyltransferase
AE003852_1206297AAF94296.1726COG0106Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerasephosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
AE003852_1207016AAF94297.1726COG0107Imidazoleglycerol-phosphate synthaseimidazoleglycerol-phosphate synthase, cyclase subunit
AE003852_272562AAF93442.121404COG0111Phosphoglycerate dehydrogenase and related dehydrogenasesD-isomer specific 2-hydroxyacid dehydrogenase family protein
AE003853_567291AAF96531.121404COG0111Phosphoglycerate dehydrogenase and related dehydrogenasesD-3-phosphoglycerate dehydrogenase-related protein
AE003852_1006823AAF94103.1602COG0112Glycine/serine hydroxymethyltransferaseserine hydroxymethyltransferase
AE003853_296306AAF96188.1602COG0112Glycine/serine hydroxymethyltransferaseserine hydroxymethyltransferase
AE003852_2171894AAF95166.132473COG0115Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase4-amino-4-deoxychorismate lyase
AE003852_26643AAF93207.132473COG0115Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyasebranched-chain amino acid amiotransferase
AE003852_1205643AAF94295.1648COG0118Glutamine amidotransferaseamidotransferase HisH
AE003852_24792AAF93206.128403COG0129Dihydroxyacid dehydratase/phosphogluconate dehydratasedihydroxy-acid dehydratase
AE003852_296819AAF93462.128403COG0129Dihydroxyacid dehydratase/phosphogluconate dehydratasephosphogluconate dehydratase
AE003852_2191657AAF95184.112362COG0136Aspartate-semialdehyde dehydrogenaseaspartate-semialdehyde dehydrogenase
AE003852_2263809AAF95253.112362COG0136Aspartate-semialdehyde dehydrogenaseaspartate-semialdehyde dehydrogenase, putative
AE003852_1383845AAF94462.131450COG0147Anthranilate/para-aminobenzoate synthases component Ipara-aminobenzoate synthase, component I
AE003852_1247327AAF94333.131450COG0147Anthranilate/para-aminobenzoate synthases component Ianthranilate synthase component I
AE003853_769955AAF96722.115723COG01604-aminobutyrate aminotransferase and related aminotransferasesdiaminobutyrate--pyruvate aminotransferase
AE003853_542611AAF96506.115723COG01604-aminobutyrate aminotransferase and related aminotransferasesaminotransferase, class III
AE003852_2786528AAF95759.115723COG01604-aminobutyrate aminotransferase and related aminotransferasesacetylornithine aminotransferase
AE003852_967976AAF94070.110640COG0241Histidinol phosphatase and related phosphataseshistidinol phosphatase-related protein
AE003852_806427AAF93920.112290COG0260Leucyl aminopeptidasepeptidase B
AE003852_2686560AAF95643.112290COG0260Leucyl aminopeptidaseaminopeptidase A/I
AE003852_2306459AAF95302.133830COG0329Dihydrodipicolinate synthase/N-acetylneuraminate lyasedihydrodipicolinate synthase
AE003852_1926196AAF94925.133830COG0329Dihydrodipicolinate synthase/N-acetylneuraminate lyaseN-acetylneuraminate lyase, putative
AE003852_2393498AAF95383.15051COG0347Nitrogen regulatory protein PIInitrogen regulatory protein P-II
AE003852_637173AAF93773.15051COG0347Nitrogen regulatory protein PIInitrogen regulatory protein P-II
AE003853_495055AAF96460.110506COG0405Gamma-glutamyltransferasegamma-glutamyltranspeptidase, putative
AE003852_198833AAF93370.110506COG0405Gamma-glutamyltransferasegamma-glutamyltranspeptidase
AE003852_1817277AAF94833.135629COG0444ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componentpeptide ABC transporter, ATP-binding protein
AE003852_652483AAF93783.135629COG0444ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componentpeptide ABC transporter, ATP-binding protein
AE003852_1162309AAF94253.135629COG0444ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componentoligopeptide ABC transporter, ATP-binding protein
AE003852_2519851AAF95507.14198COG0460Homoserine dehydrogenaseaspartokinase I/homoserine dehydrogenase, threonine-sensitive
AE003852_2851488AAF95825.14198COG0460Homoserine dehydrogenaseaspartokinase II/homoserine dehydrogenase, methionine-sensitive
AE003852_1759459AAF94785.113376COG0477Permeases of the major facilitator superfamilymultidrug resistance protein
AE003852_2946786AAF95900.113376COG0477Permeases of the major facilitator superfamilymultidrug resistance protein
AE003852_69296AAF93247.113376COG0477Permeases of the major facilitator superfamilymultidrug resistance protein, putative
AE003852_1709719AAF94751.132899COG0477Permeases of the major facilitator superfamilymultidrug transporter, putative
AE003852_1481602AAF94549.132899COG0477Permeases of the major facilitator superfamilymultidrug transporter, putative
AE003852_2542134AAF95520.19311COG0493NADPH-dependent glutamate synthase beta chain and related oxidoreductasesglutamate synthase, small subunit
AE003852_2535658AAF95517.19311COG0493NADPH-dependent glutamate synthase beta chain and related oxidoreductasesglutamate synthase, small subunit
AE003852_1246719AAF94332.1648COG0512Anthranilate/para-aminobenzoate synthases component IIanthranilate synthase component II
AE003852_2788137AAF95760.1648COG0512Anthranilate/para-aminobenzoate synthases component IIpara-aminobenzoate synthase glutamine amidotransferase, component II
AE003852_2460251AAF95453.117179COG0520Selenocysteine lyaseaminotransferase, class V
AE003852_1257681AAF94343.117179COG0520Selenocysteine lyaseNifS-related protein
AE003852_579310AAF93715.111640COG0527Aspartokinasesaspartokinase, alpha and beta subunits
AE003852_412790AAF93564.111640COG0527Aspartokinasesaspartokinase III, lysine-sensitive
AE003852_463652AAF93606.18541COG0531Amino acid transportersarginine/ornithine antiporter
AE003852_285652AAF93455.18541COG0531Amino acid transporterscadaverine/lysine antiporter CadB, putative
AE003853_1011799AAF96956.18541COG0531Amino acid transportersputrescine-ornithine antiporter
AE003852_654497AAF93785.19810COG0601ABC-type dipeptide/oligopeptide/nickel transport systems, permease componentspeptide ABC transporter, permease protein
AE003852_171999AAF93348.19810COG0601ABC-type dipeptide/oligopeptide/nickel transport systems, permease componentspeptide ABC transporter, permease protein
AE003852_1160448AAF94251.19810COG0601ABC-type dipeptide/oligopeptide/nickel transport systems, permease componentsoligopeptide ABC transporter, permease protein
AE003852_1815441AAF94831.19810COG0601ABC-type dipeptide/oligopeptide/nickel transport systems, permease componentspeptide ABC transporter, permease protein
AE003853_527474AAF96492.19810COG0601ABC-type dipeptide/oligopeptide/nickel transport systems, permease componentspeptide ABC transporter, permease protein, putative
AE003853_1054920AAF96991.19810COG0601ABC-type dipeptide/oligopeptide/nickel transport systems, permease componentsABC transporter, permease protein
AE003852_2303265AAF95297.122988COG0624Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylasessuccinyl-diaminopimelate desuccinylase
AE003852_2817169AAF95786.122988COG0624Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylasesacetylornithine deacetylase
AE003852_1803862AAF94821.11430COG0626Cystathionine beta-lyases/cystathionine gamma-synthasescystathionine beta-lyase
AE003852_2850309AAF95824.11430COG0626Cystathionine beta-lyases/cystathionine gamma-synthasescystathionine gamma-synthase
AE003852_2055531AAF95053.19192COG0686Alanine dehydrogenasealanine dehydrogenase
AE003852_1523041AAF94582.19766COG0687Spermidine/putrescine-binding periplasmic proteinspermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
AE003853_1068927AAF97004.19766COG0687Spermidine/putrescine-binding periplasmic proteinspermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
AE003852_1521892AAF94581.19766COG0687Spermidine/putrescine-binding periplasmic proteinspermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
AE003852_2800458AAF95770.132384COG0703Shikimate kinaseshikimate kinase
AE003852_743534AAF93860.14319COG07223-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthasephospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive
AE003852_1620176AAF94662.14319COG07223-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthasephospho-2-dehydro-3-deoxyheptonate aldolase, trp-sensitive
AE003852_170267AAF93347.18578COG0747ABC-type dipeptide transport system, periplasmic componentpeptide ABC transporter, periplasmic peptide-binding protein
AE003852_1813819AAF94830.18578COG0747ABC-type dipeptide transport system, periplasmic componentpeptide ABC transporter, periplasmic peptide-binding protein
AE003852_5605AAF93187.121232COG0765ABC-type amino acid transport system, permease componentamino acid ABC transproter, permease protein
AE003852_2001811AAF95010.121232COG0765ABC-type amino acid transport system, permease componentamino acid ABC transporter, permease protein
AE003852_2001131AAF95009.121232COG0765ABC-type amino acid transport system, permease componentamino acid ABC transporter, permease protein
AE003853_702263AAF96656.121232COG0765ABC-type amino acid transport system, permease componentarginine ABC transporter, permease protein
AE003853_988599AAF96932.121232COG0765ABC-type amino acid transport system, permease componentamino acid ABC transporter, permease protein
AE003853_701598AAF96655.121232COG0765ABC-type amino acid transport system, permease componentarginine ABC transporter, permease protein
AE003853_990272AAF96934.121232COG0765ABC-type amino acid transport system, permease componentamino acid ABC transporter, permease protein
AE003853_713856AAF96670.113224COG0814Amino acid permeasestyrosine-specific transport protein
AE003853_177193AAF96073.113224COG0814Amino acid permeasestryptophan-specific transport protein
AE003852_1381482AAF94460.12180COG0814Amino acid permeasesserine transporter
AE003852_1789608AAF94809.12180COG0814Amino acid permeasesserine transporter
AE003853_989435AAF96933.132448COG0834ABC-type amino acid transport/signal transduction systems, periplasmic component/domainamino acid ABC transporter, periplasmic amino acid-binding protein
AE003853_702954AAF96657.132448COG0834ABC-type amino acid transport/signal transduction systems, periplasmic component/domainarginine ABC transporter, periplasmic arginine-binding protein
AE003852_6354AAF93188.132448COG0834ABC-type amino acid transport/signal transduction systems, periplasmic component/domainamino acid ABC transporter, periplasmic amino acid-binding portion
AE003852_2002699AAF95011.132448COG0834ABC-type amino acid transport/signal transduction systems, periplasmic component/domainamino acid ABC transporter, periplasmic amino acid-binding protein
AE003852_2864958AAF95839.1824COG1027Aspartate ammonia-lyaseaspartate ammonia-lyase
AE003852_986166AAF94085.133826COG1045Serine acetyltransferaseserine acetyltransferase-related protein
AE003852_981833AAF94081.133826COG1045Serine acetyltransferaseserine acetyltransferase-related protein
AE003852_2822156AAF95790.133826COG1045Serine acetyltransferaseserine acetyltransferase
AE003853_837892AAF96783.133297COG1063Threonine dehydrogenase and related Zn-dependent dehydrogenasesthreonine 3-dehydrogenase
AE003852_801201AAF93913.117179COG1104Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymesaminotransferase NifS, class V
AE003852_1518957AAF94579.196COG1115Na+/alanine symportersodium/alanine symporter
AE003852_840439AAF93949.196COG1115Na+/alanine symportersodium/alanine symporter
AE003852_2511798AAF95499.196COG1115Na+/alanine symportersodium/alanine symporter
AE003852_1163262AAF94254.135629COG1124ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componentoligopeptide ABC transporter, ATP-binding protein
AE003852_651445AAF93782.135629COG1124ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componentpeptide ABC transporter, ATP-binding protein
AE003852_1818269AAF94834.135629COG1124ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componentpeptide ABC transporter, ATP-binding protein
AE003852_1447951AAF94517.135629COG1126ABC-type polar amino acid transport system, ATPase componentamino acid ABC transporter, ATP-binding protein
AE003852_4871AAF93186.135629COG1126ABC-type polar amino acid transport system, ATPase componentamino acid ABC transporter, ATP-binding protein
AE003852_2003660AAF95012.135629COG1126ABC-type polar amino acid transport system, ATPase componentamino acid ABC transporter, ATP-binding protein
AE003853_987883AAF96931.135629COG1126ABC-type polar amino acid transport system, ATPase componentamino acid ABC transporter, ATP-binding protein
AE003853_703759AAF96658.135629COG1126ABC-type polar amino acid transport system, ATPase componentarginine ABC transporter, ATP-binding protein
AE003852_653469AAF93784.132450COG1173ABC-type dipeptide/oligopeptide/nickel transport systems, permease componentspeptide ABC transporter, permease protein
AE003852_1161382AAF94252.132450COG1173ABC-type dipeptide/oligopeptide/nickel transport systems, permease componentsoligopeptide ABC transporter, permease protein
AE003853_526419AAF96491.132450COG1173ABC-type dipeptide/oligopeptide/nickel transport systems, permease componentspeptide ABC transporter, permease protein, putative
AE003852_1816390AAF94832.132450COG1173ABC-type dipeptide/oligopeptide/nickel transport systems, permease componentspeptide ABC transporter, permease protein
AE003852_173030AAF93349.132450COG1173ABC-type dipeptide/oligopeptide/nickel transport systems, permease componentspeptide ABC transporter, permease protein
AE003852_1524175AAF94583.118314COG1177ABC-type spermidine/putrescine transport system, permease component IIspermidine/putrescine ABC transporter, permease protein
AE003853_787831AAF96744.130277COG1280Putative threonine efflux proteinconserved hypothetical protein
AE003852_130748AAF93313.130277COG1280Putative threonine efflux proteinconserved hypothetical protein
AE003852_197130AAF93367.130277COG1280Putative threonine efflux proteinconserved hypothetical protein
AE003852_1847962AAF94862.130277COG1280Putative threonine efflux proteinconserved hypothetical protein
AE003853_954303AAF96896.130277COG1280Putative threonine efflux proteinconserved hypothetical protein
AE003852_1518246AAF94578.130277COG1280Putative threonine efflux proteinconserved hypothetical protein
AE003852_2090031AAF95087.130277COG1280Putative threonine efflux proteinconserved hypothetical protein
AE003853_346568AAF96263.130277COG1280Putative threonine efflux proteinconserved hypothetical protein
AE003853_442972AAF96416.17276COG1448Aspartate/tyrosine/aromatic aminotransferaseamino acid biosynthesis aminotransferase
AE003852_1371535AAF94452.17276COG1448Aspartate/tyrosine/aromatic aminotransferaseaspartate aminotransferase
AE003852_1380028AAF94459.14854COG1760L-serine deaminaseL-serine dehydratase 1
AE003853_602191AAF96567.14854COG1760L-serine deaminaseL-serine dehydratase 1
AE003853_1013186AAF96957.18542COG1982Arginine/lysine/ornithine decarboxylasesornithine decarboxylase, inducible
AE003852_287033AAF93456.18542COG1982Arginine/lysine/ornithine decarboxylaseslysine decarboxylase, inducible
AE003852_294837AAF93460.11258COG2610H+/gluconate symporter and related permeasesgluconate permease, putative
AE003853_858156AAF96801.11258COG2610H+/gluconate symporter and related permeasespermease
AE003852_1276291AAF94361.112971COG2986Histidine ammonia-lyasehistidine ammonia-lyase
AE003852_1389975AAF94466.131616COG3283Transcriptional regulator of aromatic amino acids metabolismtranscriptional regulator TyrR

Excluded Genes in vibriocholerae_n16961_o1 : E
gene_idprotein_idgene_familycogcog_descriptionproduct
AE003852_1079901AAF94171.133556COG0346Lactoylglutathione lyase and related lyaseslactoylglutathione lyase
AE003853_375133AAF96307.133556COG0346Lactoylglutathione lyase and related lyasesconserved hypothetical protein
AE003853_342679AAF96255.133556COG0346Lactoylglutathione lyase and related lyasesconserved hypothetical protein
AE003853_338972AAF96249.133556COG0346Lactoylglutathione lyase and related lyasesbiphenyl-2,3-diol 1,2-dioxygenase III-related protein
AE003853_419373AAF96380.133556COG0346Lactoylglutathione lyase and related lyasesconserved hypothetical protein
AE003853_412362AAF96367.133556COG0346Lactoylglutathione lyase and related lyasesbiphenyl-2,3-diol 1,2-dioxygenase III-related protein
AE003853_391927AAF96338.133556COG0346Lactoylglutathione lyase and related lyaseshypothetical protein
AE003853_329859AAF96236.133556COG0346Lactoylglutathione lyase and related lyasesbiphenyl-2,3-diol 1,2-dioxygenase III-related protein
AE003853_434487AAF96409.133556COG0346Lactoylglutathione lyase and related lyasesconserved hypothetical protein
AE003853_843069AAF96787.133556COG0346Lactoylglutathione lyase and related lyasesglyoxylase I family protein


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