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Van Landeghem, S., Björne, J., Wei, C.-H., Hakala, K., Pyysalo, S., Ananiadou, S., Kao, H.-Y., Lu, Z., Salakoski, T., Van de Peer, Y., Ginter, F. (2013)
Large-scale event extraction from literature with multi-levelgene normalization. PLOS One 8: e55814.
Van Bogaert, M., Holvoet, K., Roelants, S. L.K.W, Li, B., Lin, Y.-C., Van de Peer, Y., Soetaert, W. (2013)
The biosynthetic gene cluster for sophorolipids: a biotechnological interesting biosurfactant produced by Starmerella bombicola. Molecular Microbiology
Van Landeghem, S., De Bodt, S., Drebert, Z. J., Inzé, D., Van de Peer, Y. (2013)
The potential of text mining in data integration and network biology for plant research: a case study on Arabidopsis. The Plant Cell 25, 794-807.
Roelants, S. L.K.W, Saerens, K.M., Derycke, T., Li, B., Lin, Y.-C., Van de Peer, Y., De Maeseneire, S.L., Van Bogaert, M., Soetaert, W. (2013)
Candida bombicola as a platform organism for the productionof tailor-made biomolecules. Biotechnol Bioeng.
De Smet, R., Adams, K., Vandepoele, K., Van Montagu, M., Maere, S., Van de Peer, Y. (2013)
Convergent gene loss following gene and genome duplications createssingle-copy families in flowering plants. PNAS 110, 2898-2903.
* Ruttink, T., * Sterck, L., Rohde, A., Bendixen, C., Rouzé, P., Aslankoohi, E., Van de Peer, Y., Roldán-Ruiz, I. (2013)
Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne. Plant Biotechnol J. (In Press). *contributed equally
Read, B. A., Kegel, J., Klute, M. J., Kuo, Y.-C., Lefebvre, S. C., Maumus, F., Mayer, K., Miller, G., Monier, A., Salamov, A., Young, N.D., Aguilar, ., Aguilar, ., Claverie, J., Frickenhaus, S., Gonzalez, A., Herman, E. K., Lin, Y.-C., Napier, J., Ogata, H., Sarno, A. F., Schmutz, J., Schroeder, D., de Vargas, C., Vérret, F., von Dassow, P., Valentin, K., Van de Peer, Y., Rouzé, P., Wheeler, G., Allen, A. E., Bidle, K., Borodovsky, M., Bowler, C., Brownlee, C., Mark Cock, J., Elias, M., Gladyshev, V. N., Groth, M., Groth, M., Guda, C., Hadaegh, A., Iglesias-Rodriguez, D., Jenkins, B., Jones, B. M., Leese, F., Lobanov, A., Lawson, T., Lindquist, E., Marsh, M. E., Lomsadze, A., Mueller-Roeber, B., Lucas, S., Malik, S.-B., Pagarete, A., Mock, T., Probert, I., Parker, M.S., Quesneville, H., Raines, C., Rensing, S. A., Mauricio Riano-Pachon, D., Richier, S., Rokitta, S., Shiraiwa, Y., Soanes, D. M., van der Giezen, M., Wahlund, T. M., Williams, C., Wilson, W., Wolfe, K., Wurch, L. L., Dacks, J. B., Delwiche, C. F., Dyhrman, S. T., Glöckner, G., John, U., Richards, T., Worden, A. Z., Zhang, J., V. Grigoriev, I. (2013)
Emiliania's pan genome drives the phytoplankton's global distribution. Nature (In Press).
Nystedt, B., Street, N. R., Zuccolo, A., Lin, Y.-C., Wetterbom, A., Vezzi, A., Scofield, D. G., Delhomme, N., Alexeyenko, A., Giacomello, S., Vicedomini, R., Sahlin, K., Sherwood, E., Elfstand, M., Gramzow, L., Holmberg, K., Hällman, J., Keech, O., Klasson, L., Koriabine, M., Kucukoglu, M., Käller, M., Luthman, J., Lysholm, F., Olson, A., Niittylä, T., Ritland, K., Rilakovic, N., Rosselló, J. A., Sena, J., Svensson, T., Talavera-López, C., Theißen, G., Vanneste, K., Tuominen, H., Zhang, J., Wu, Z., Zerbe, P., Bhalerao, R.P., Bohlmann, J., Arvestad, L., Bousquet, J., Garcia Gil, R., de Jong, P.J., Hvidsten, T. R., MacKay, J., Ritland, K., Morgante, M., Sundberg, B., Van de Peer, Y., Lee Thompson, S., Nilsson, O., Andersson, B., Lundeberg, J., Jansson, S. (2013)
The 20 Gbp Norway spruce genome sheds light on conifer genome evolution. Nature (In Press).
Galagan, J. E., Minch, K., Peterson, M., Lyubetskaya, A., Azizi, E., Sweet, L., Gomes, A., Rustad, T., Dolganov, G., Glotova, I., Abeel, T., Mahwinney, C., Kennedy, A. D., Allard, R., Brabant, W., Krueger, A., Jaini, S., Honda, B., Yu, W., Hickey, M. J., Zucker, J., Garay, C., Weiner, J., Sisk, P., Stolte, C., Winkler, J. K., Van de Peer, Y., Iazzetti, P., Camacho, D.M., Dreyfuss, J., Liu, Y., Dorhoi, A., Mollenkopf, H., Drogaris, P., Lamontagne, J., Zhou, K., Piquenot, J., Tae Park, S., Raman, S., H.E. Kaufmann, S., P. Mohney, R., Chelsky, D., Branch Moody, D., R. Sherman, D., K. Schoolnik, G. (2013)
Reconstruction of the Mycobacterium tuberculosis Regulatory Network and Deconstruction of the Hypoxic Response. Nature (In Press).
Van Landeghem, S., De Baets, B., Van de Peer, Y., Saeys, Y. (2009)
Training a text miner to summarize bio-molecular interactions found in research articles. Machine Learning Summerschool
Van Landeghem, S., Saeys, Y., De Baets, B., Van de Peer, Y. (2008)
Applying supervised learning and feature selection techniques to extract genetic interactionsfrom text. CIL PhD students day @ ECML
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