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WorkbenchChlamydomonas reinhardtii
Chlamydomonas rheinhartii is a unicellular green algae that has a pair of flagella to make it motile. It's now used by JGI as a benchmark for new sequencing technologies to detect low abundant mRNAs using 454 and Solexa sequencers.
Publication:
The Chlamydomonas genome reveals the evolution of key animal and plant functions.Science 318, 245-50 (2007).
Info and Links
| Source | JGI v5.0 assembly, annot v5.3.1 based on Augustus u11.6 |
| PLAZA identifier | cre |
| NCBI link | Chlamydomonas reinhardtii |
| Mitochondrion | AF008237 | Chloroplast | BK000554 |
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Annotations
Page 1 of 894, showing 20 records out of 17872 total, starting on record 1, ending on 20
| Gene | Transcript | Start | Stop | Strand | Chr | Type | Gene family |
|---|---|---|---|---|---|---|---|
| CR00G00010 | CR00G00010.1 | 2135 | 2602 | - | scaffold_38 | coding | HOM03M012884 |
| CR00G00020 | CR00G00020.1 | 145 | 1815 | + | scaffold_45 | coding | HOM03M010566 |
| CR00G00030 | CR00G00030.1 | 2204 | 11596 | + | scaffold_45 | coding | HOM03M010742 |
| CR00G00040 | CR00G00040.1 | 14230 | 14616 | - | scaffold_45 | coding | HOM03M013438 |
| CR00G00050 | CR00G00050.1 | 14728 | 17065 | - | scaffold_23 | coding | HOM03M003950 |
| CR00G00060 | CR00G00060.1 | 17537 | 17839 | + | scaffold_23 | coding | HOM03M008557 |
| CR00G00070 | CR00G00070.1 | 19677 | 20291 | - | scaffold_23 | coding | HOM03M000004 |
| CR00G00080 | CR00G00080.1 | 21453 | 21825 | + | scaffold_23 | coding | HOM03M008331 |
| CR00G00090 | CR00G00090.1 | 38480 | 41383 | + | scaffold_23 | coding | HOM03M004637 |
| CR00G00100 | CR00G00100.1 | 42499 | 44794 | - | scaffold_23 | coding | HOM03M008819 |
| CR00G00110 | CR00G00110.1 | 45553 | 45924 | + | scaffold_23 | coding | orphan gene |
| CR00G00120 | CR00G00120.1 | 50035 | 50456 | - | scaffold_23 | coding | HOM03M013938 |
| CR00G00130 | CR00G00130.1 | 54346 | 54858 | + | scaffold_23 | coding | HOM03M013689 |
| CR00G00140 | CR00G00140.1 | 59994 | 60702 | - | scaffold_23 | coding | HOM03M007481 |
| CR00G00150 | CR00G00150.1 | 61457 | 61791 | + | scaffold_23 | coding | HOM03M012877 |
| CR00G00160 | CR00G00160.1 | 67383 | 69190 | - | scaffold_23 | coding | orphan gene |
| CR00G00170 | CR00G00170.1 | 89275 | 90369 | + | scaffold_23 | coding | HOM03M003735 |
| CR00G00180 | CR00G00180.1 | 107652 | 109300 | - | scaffold_23 | coding | orphan gene |
| CR00G00190 | CR00G00190.1 | 112376 | 113235 | - | scaffold_23 | coding | orphan gene |
| CR00G00200 | CR00G00200.1 | 113764 | 114066 | + | scaffold_23 | coding | HOM03M007147 |