Thomas Van Parys

Tool Developer
(Group member since 2007)


+32 (0) 9 33 13 695

VIB / Ghent University
Bioinformatics & Systems Biology
Technologiepark 927
B-9052 Gent
BELGIUM

CV

  • 1999 - 2003: Industrial Engineer (informatics) at Hogeschool Gent
  • 2003 - 2005: Licentiaat Informatics (software development) at Ghent University
  • 2005 - 2007: Webmaster HiPEAC (ELIS - Ghent University)
  • 2007 - ...: Software development at BEG

Research

  • Java development:
    GenomeView, Cytoscape plugins, Plaza visualizations, and other tools.
  • Web development:
    BEG website, conference websites, expression data viewer, ...

Papers

(5) Abeel, T., Van Parys, T., Saeys, Y., Galagan, J., Van de Peer, Y. (2012) GenomeView: a next-generation genome browser. Nucleic Acids Res. 40,e12.

(4) Kano, Y., Björne, J., Ginter, F., Salakoski, T., Buyko, E., Hahn, U., Cohen, D., Verspoor, K., Roeder, C., Hunter, L.E., Kilicoglu, H., Bergler, S., Van Landeghem, S., Van Parys, T., Van de Peer, Y., Miwa, S., Ananiadou, S., Neves, M., Pascual-Montano, A., Ozgur, A., Radev, D.R., Riedel, S., Saetre, R., Chun, H.W., Kim, J.R., Pyysalo, S., Ohta, T., Tsujii, J. (2011) U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinformatics 12,481.

(3) * Audenaert, P., * Van Parys, T., Brondel, F., Pickavet, M., Demeester, P., Van de Peer, Y., Michoel, T. (2011) CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. Bioinformatics 27,1587-1588 . *contributed equally

(2) Joshi, A., Van Parys, T., Van de Peer, Y., Michoel, T. (2010) Characterizing regulatory path motifs in integrated networks using perturbational data. Genome Biol. 11, R32.

(1) * Proost, S., * Van Bel, M., Sterck, L., Billiau, K., Van Parys, T., Van de Peer, Y., Vandepoele, K. (2009) PLAZA: a comparative genomics resource to study gene and genome evolution in plants. The Plant Cell 21, 3718-3731. *contributed equally











Contact:
VIB / UGent
Bioinformatics & Evolutionary Genomics
Technologiepark 927
B-9052 Gent
BELGIUM
+32 (0) 9 33 13807 (phone)
+32 (0) 9 33 13809 (fax)

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