Thomas Van Parys

Tool Developer
(Group member since 2007)


+32 (0) 9 33 13 695

VIB / Ghent University
Bioinformatics & Systems Biology
Technologiepark 927
B-9052 Gent
BELGIUM

CV

  • 1999 - 2003: Industrial Engineer (informatics) at Hogeschool Gent
  • 2003 - 2005: Licentiaat Informatics (software development) at Ghent University
  • 2005 - 2007: Webmaster HiPEAC (ELIS - Ghent University)
  • 2007 - ...: Software development at BEG

Research

  • Java development:
    GenomeView, Cytoscape plugins, Plaza visualizations, and other tools.
  • Web development:
    BEG website, conference websites, expression data viewer, ...

Papers

(5) Abeel, T., Van Parys, T., Saeys, Y., Galagan, J., Van de Peer, Y. (2012) GenomeView: a next-generation genome browser. Nucleic Acids Res. 40:e12.

(4) Kano, Y., Björne, J., Ginter, F., Salakoski, T., Buyko, E., Hahn, U., Cohen, D., Verspoor, K., Roeder, C., Hunter, L.E., Kilicoglu, H., Bergler, S., Van Landeghem, S., Van Parys, T., Van de Peer, Y., Miwa, S., Ananiadou, S., Neves, M., Pascual-Montano, A., Ozgur, A., Radev, D.R., Riedel, S., Saetre, R., Chun, H.W., Kim, J.R., Pyysalo, S., Ohta, T., Tsujii, J. (2011) U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinformatics 12:481.

(3) * Audenaert, P., * Van Parys, T., Brondel, F., Pickavet, M., Demeester, P., Van de Peer, Y., Michoel, T. (2011) CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. Bioinformatics 27:1587-1588 . *contributed equally

(2) Joshi, A., Van Parys, T., Van de Peer, Y., Michoel, T. (2010) Characterizing regulatory path motifs in integrated networks using perturbational data. Genome Biol. 11, R32.

(1) * Proost, S., * Van Bel, M., Sterck, L., Van Parys, T., Van de Peer, Y., Vandepoele, K. (2009) PLAZA: a comparative genomics resource to study gene and genome evolution in plants. The Plant Cell 21, 3718-3731. *contributed equally











Contact:
VIB / UGent
Bioinformatics & Evolutionary Genomics
Technologiepark 927
B-9052 Gent
BELGIUM
+32 (0) 9 33 13807 (phone)
+32 (0) 9 33 13809 (fax)

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