Eric Bonnet

Postdoc (Group member since 2001) + 32 (0) 9 33 13 758 Personal homepage VIB / Ghent University Bioinformatics & Systems Biology Technologiepark 927 B-9052 Gent BELGIUM

Research

• microRNAs
• non-coding RNAs
• Systems biology
• Computers & grid computing

Eric in five dates

April 6, 1968, 20h30
birth in Limoges (France).

1984
First computer: Sega Yeno with a processor Z80a 3.58 Mhz :-).

1996
PhD in population biology " Phylogeny and resource sharing in Orthoptera Acrididae ". University of Limoges. France.

1997
Begin to work in Paris for computer science companies, first as a hot-liner and then as a software engineer.

2001
Back to research: Join the crew of Bioinformatics & Evolutionary Genomics in Ghent.

Papers

(10) Cock, M., Sterck, L., Rouzé, P., Scornet, D., Allen, A., Amoutzias, G., Anthouard, V., Artiguenave, F., Aury, J., Badger, J., Beszteri, B., Billiau, K., Bonnet, E., Bothwell, J., Bowler, C., Boyen, C., Brownlee, C., Carrano, C., Charrier, B., Youn Cho, G., Coelho, A., Colln, J., Corre, E., Da Silva, C., Delage, L., Delaroque, N., Dittami, S., Doulbeau, S., Elias, M., Farnham, G., Gachon, C., Gschloessl, B., Heesch, S., Jabbari, K., Jubin, C., Kawai, H., Kimura, K., Kloareg, B., Kpper, F., Lang, D., Le Bail, A., Leblanc, C., Lerouge, P., Lohr, M., Lopez, P., Martens, C., Maumus, F., Michel, G., MirandaSaavedra, D., Morales, J., Moreau, H., Motomura, T., Nagasato, C., Napoli, C., Nelson, D., Nyvall Colln, P., Peters, S., Pommier, C., Potin, P., Poulain, J., Quesneville, H., Read, B., Rensing, S.A., Ritter, A., Rousvoal, S., Samanta, M., Samson, G., Schroeder, D., Sgurens, B., Strittmatter, M., Tonon, T., Tregear, J., Valentin, K., von Dassow, P., Yamagishi, T., Van de Peer, Y., Wincker, P. (2010) The Ectocarpus genome and the independent evolution of multicellularity in the brown algae. Nature (In Press).

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(9) Vermeirssen, V., Joshi, A., Michoel, T., Bonnet, E., Casneuf, T., Van de Peer, Y. (2009) Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development. Molecular BioSystems 2009, 5, 1817-30.

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(8) Abeel, T., Saeys, Y., Bonnet, E., Rouzé, P., Van de Peer, Y. (2008) Generic eukaryotic core promoter prediction using structural features of DNA. Genome Research 18, 310-23.

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(7) Van Leene, J., Stals, H., Eeckhout, D., Persiau, G., Van De Slijke, E., Van Isterdael, G., De Clercq, R., Bonnet, E., Laukens, K., Remmerie, N., Hendrickx, K., De Vijlder, T., Abdelkrim, A., Pharazyn, A., Van Onckelen, H., Witters, E., Inzé, D., De Jaeger, G. (2007) A Tandem Affinity Purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana. Mol. Cel. Prot.

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(6) * Michoel, T., * Maere, S., Bonnet, E., Joshi, A., Saeys, Y., Van den Bulcke, T., Van Leemput, K., van Remortel, P., Kuiper, M., Marchal, K., Van de Peer, Y. (2007) Validating module networks learning algorithms using simulated data. BMC Bioinformatics 8, S5. *contributed equally

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(5) Bonnet, E., Van de Peer, Y., Rouzé, P. (2006) The small RNA world of plants. New Phytol. 171, 451-68.

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(4) Faes, P., Minnaert, B., Christiaens, M., Bonnet, E., Saeys, Y., Stroobandt, D., Van de Peer, Y. (2006) A Scalable Hardware Accelerator for Comparing Protein Sequences.. Proceedings of the First International Conference on Scalable Information Systems. Hong Kong, April 2006, on CD..

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(3) * Bonnet, E., * Wuyts, J., Rouzé, P., Van de Peer, Y. (2004) Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 20, 2911-7. *contributed equally

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(2) Bonnet, E., Wuyts, J., Rouzé, P., Van de Peer, Y. (2004) Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important new target genes. Proc. Natl. Acad. Sci. USA 101, 11511-6.

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(1) Bonnet, E., Van de Peer, Y. (2002) ZT: a software tool for simple and partial Mantel tests. J. Stat. Soft. 7, 1-12..

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