Bram Slabbinck

Bioinformatician (Group member since 2010) + 32 (0) 9 33 13 537 VIB / Ghent University Bioinformatics & Systems Biology Technologiepark 927 B-9052 Gent BELGIUM

CV

• 2010 - present: Computational biologist/bioinformatics developer. Bioinformatics & Evolutionary Genomics, VIB, Belgium
• 2006-2009: PhD in Applied Biological Sciences. Thesis title: From learning taxonomies to phylogenetic learning: a computational approach to FAME-based bacterial species identification. Promotors: Bernard De Baets, Paul De Vos & Peter Dawyndt. Faculty of Bioscience Engineering, Ghent University, Belgium. (BELSPO, IUAP)
• 2004-2005: Master in Applied Informatics (Subsequent Master). Faculty of Engineering, Ghent University, Belgium.
• 1999-2004: Master in Bioscience Engineering: Cell and Gene Biotechnology. Faculty of Bioscience Engineering, Ghent University, Belgium.

Papers

(7) Waegeman, W. ., Verwaeren, J., Slabbinck, B., De Baets, B. (2011) Supervised learning algorithms for multi-class classification problems with partial class memberships. Fuzzy Sets and Systems

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(6) De Bruyne, K., Slabbinck, B., Waegeman, W. ., Vauterin, P., De Baets, B., Vandamme, P. (2011) Bacterial species identification from MALDI-TOF mass spectra through data analysis and machine learning. Syst. Appl. Microbiol. 34, 20-29.

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(5) Slabbinck, B., Waegeman, W. ., Dawyndt, P., De Vos, P., De Baets, B. (2010) From learning taxonomies to phylogenetic learning: integration of 16S rRNA gene data into FAME-based bacterial classification. BMC Bioinformatics 11, 69.

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(4) Slabbinck, B., De Baets, B., Dawyndt, P., De Vos, P. (2010) Analysis of plant-pathogenic pseudomonas species using intelligent learning methods: a general focus on taxonomy and fatty acid analysis within the genus Pseudomonas. Rev. Mex. Fitopatol. 28, 1-16.

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(3) Slabbinck, B., De Baets, B., Dawyndt, P., De Vos, P. (2009) Towards large-scale FAME-based bacterial species identification using machine learning techniques. Syst. Appl. Microbiol. 32,163-76.

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(2) Slabbinck, B., Dawyndt, P., Martens, M., De Vos, P., De Baets, B. (2008) TaxonGap: a visualization tool for intra- and inter-species variation among individual biomarkers. Bioinformatics 24,866-7.

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(1) Slabbinck, B., De Baets, B., Dawyndt, P., De Vos, P. (2008) Genus-wide Bacillus species identification through proper artificial neural network experiments on fatty acid profiles. Antonie Van Leeuwenhoek 94,187-98.

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