Anagha Joshi

Phd Student
(Group member from 2006 until 2010)


+ 32 (0) 9 33 13 758

VIB / Ghent University
Bioinformatics & Systems Biology
Technologiepark 927
B-9052 Gent
BELGIUM

Papers

(13) Michoel, T., Joshi, A., Nachtergaele, B., Van de Peer, Y. (2011) Enrichment and aggregation of topological motifs are independent organizational principles of integrated interaction networks. Mol. BioSyst. 7(10):2769-78.

(12) Joshi, A., Van de Peer, Y., Michoel, T. (2011) Structural and functional organization of RNA regulons in the post-transcriptional regulatory network of yeast. Nucleic Acids Res. 39(21):9108-17.

(11) Michoel, T., Joshi, A., Bonnet, E., Vermeirssen, V., Van de Peer, Y. (2010) Towards system level modeling of functional modules and regulatory pathways using genome-scale data. Proceedings of the Seventh International Workshop on Computational Systems Biology (WCSB 2010) 71-74. Luxembourg, Luxembourg.

(10) Bonnet, E., Tatari, M., Joshi, A., Michoel, T., Marchal, K., Berx, G., Van de Peer, Y. (2010) Module network inference from a cancer gene expression data set identifies microRNA regulated modules. PLoS One 5(4):e10162.

(9) Joshi, A., Van Parys, T., Van de Peer, Y., Michoel, T. (2010) Characterizing regulatory path motifs in integrated networks using perturbational data. Genome Biol. 11(3):R32.

(8) Vermeirssen, V., Joshi, A., Michoel, T., Bonnet, E., Casneuf, T., Van de Peer, Y. (2009) Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development. Molecular BioSystems 5(12):1817-30.

(7) Michoel, T., De Smet, R., Joshi, A., Van de Peer, Y., Marchal, K. (2009) Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks. BMC Syst. Biol. 3:49.

(6) Michoel, T., De Smet, R., Joshi, A., Marchal, K., Van de Peer, Y. (2009) Reverse-engineering transcriptional modules from gene expression data. Ann. NY. Acad. Sci. 1158:36-43.

(5) Joshi, A., De Smet, R., Marchal, K., Van de Peer, Y., Michoel, T. (2009) Module networks revisited: computational assessment and prioritization of model predictions. Bioinformatics 25(4):490-6.

(4) Joshi, A., Van de Peer, Y., Michoel, T. (2008) Analysis of a Gibbs sampler method for model based clustering of gene expression data. Bioinformatics 24(2):176-83.

(3) Michoel, T., Maere, S., Bonnet, E., Joshi, A., Saeys, Y., Van den Bulcke, T., Van Leemput, K., van Remortel, P., Kuiper, M., Marchal, K., Van de Peer, Y. (2007) Validating module network learning algorithms using simulated data. BMC Bioinformatics 8, 860-871.

(2) * Michoel, T., * Maere, S., Bonnet, E., Joshi, A., Saeys, Y., Van den Bulcke, T., Van Leemput, K., van Remortel, P., Kuiper, M., Marchal, K., Van de Peer, Y. (2007) Validating module networks learning algorithms using simulated data. BMC Bioinformatics 8 Suppl 2:S5. *contributed equally

(1) Thakur, K., Joshi, A., Gopal, B. (2006) Structural and biophysical studies on two promoter recognition domains of the extra-cytoplasmic function σ factor σ rC from Mycobacterium tuberculosis. J. Biol. Chem. 282:4711-8.











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Bioinformatics & Evolutionary Genomics
Technologiepark 927
B-9052 Gent
BELGIUM
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