PLAZA 3.0 Dicots : Functional Clustering

Functional clusters: Medicago truncatula

Tool for the visualization of the physical clustering of functionally related genes.

Chromosomal overview

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Data Overview

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Experiments Overview

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal	Cluster count
1	GO	Primary GO data only.	2	30	80	0.001	X	586
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X	715
3	GO	All GO data.	2	30	80	0.001	X	898
4	GO	Primary GO data only.	10	150	300	0.001	X	201
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X	228
6	GO	All GO data.	10	150	300	0.001	X	281
7	GO	Primary GO data only.	2	30	80	0.001	V	9
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V	14
9	GO	All GO data.	2	30	80	0.001	V	38
10	GO	Primary GO data only.	10	150	300	0.001	V	8
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V	18
12	GO	All GO data.	10	150	300	0.001	V	21
13	InterPro	No filter applied.	2	30	80	0.001	X	1244
14	InterPro	No filter applied.	10	150	300	0.001	X	189
15	InterPro	No filter applied.	2	30	80	0.001	V	25
16	InterPro	No filter applied.	10	150	300	0.001	V	2